View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14914_high_2 (Length: 455)
Name: NF14914_high_2
Description: NF14914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14914_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 30597979 - 30597532
Alignment:
| Q |
1 |
cacactttaacctctcttgacctttgtgttggtccccctagaactgatgagagattatcatttcctaagtcccttaatttgccagcattaaccaccttgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30597979 |
cacactttaacctctcttgacctttgtgttggtccccctagaactgatgagagattatcatttcctaagtcccttaatttgccagcattaaccaccttgt |
30597880 |
T |
|
| Q |
101 |
ctctagagtcattcgccttttgtgttggtgacgatggttgtgctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30597879 |
ctctagagtcattcgccttttgtgttggtgacgatggttgtgctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgt |
30597780 |
T |
|
| Q |
201 |
tcttgatgcagaaagcctctgtatatcaagtgttacacttaccaatttgactatagtaggggatcctgtttactatagcacggttgagttatctactcca |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30597779 |
tcttgatgcagaaagcctctgcatatcaagtgttacacttaccaatttgactatagtaggggatcctgtttactatagcacggttgagttatctactcca |
30597680 |
T |
|
| Q |
301 |
agtcttttcacctttgactttgtttgttatgagggtattcctgttttgaaactatgtaggagcaaaatcaacctctcttctgtcaaacatgtaaatattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30597679 |
agtcttttcacctttgactttgtttgttatgagggtattcctgttttgaaactatgtaggagcaaaatcaacctctcttctgtcaaacatgtaaatattg |
30597580 |
T |
|
| Q |
401 |
aggtaagaatgtggacagattatgccgatgcttcgttggttcttctca |
448 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30597579 |
aggtaagaatgtggacagattatgccgatgcttcgttggttcttctca |
30597532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 6844519 - 6844699
Alignment:
| Q |
60 |
atttcctaagtcccttaatttgccagcattaaccaccttgtctctagagtcattcgccttttgtgttggtgacgatggttgtgctgagcctttttcggca |
159 |
Q |
| |
|
|||||||| || ||| |||||||||||||| ||||||||||||||||||| ||| |||| |||||| || |||||||||| ||| |||||||||||| |
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| T |
6844519 |
atttcctatttcgcttgatttgccagcattagccaccttgtctctagagtcgttcatctttcctgttggcgatgatggttgtgttgaccctttttcggca |
6844618 |
T |
|
| Q |
160 |
ttaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctgtatatcaagtgttacactt |
240 |
Q |
| |
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|| | ||||||||| | |||||| |||| ||| |||| ||||||| | | ||| ||||||||||||||||| ||||||| |
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|
| T |
6844619 |
tttagcagtttgaatagtttgattattcggtactgtagagttcttggtcaacaaaacctctgtatatcaagtgctacactt |
6844699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 248
Target Start/End: Original strand, 6889514 - 6889702
Alignment:
| Q |
60 |
atttcctaagtcccttaatttgccagcattaaccaccttgtctctagagtcattcgccttttgtgttggtgacgatggttgtgctgagcctttttcggca |
159 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||| || |||||| | ||||||||||||||||| |
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| T |
6889514 |
atttcctagttctcttaatttgccagcattagccaccttgtttctagagtcattcacctttcctgttgacgatgatggtcatactgagcctttttcggca |
6889613 |
T |
|
| Q |
160 |
ttaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctgtatatcaagtgttacacttaccaattt |
248 |
Q |
| |
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|| | |||||||| | |||||| |||| | |||||| |||||||||| | ||| |||||| |||| ||||| ||||||| ||||||| |
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| T |
6889614 |
tttagtagtttgaatagtttgatcattcggggttgtaaagttcttgatgaacaaaacctctggatattaagtgctacacttgccaattt |
6889702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 6849020 - 6849145
Alignment:
| Q |
123 |
tgttggtgacgatggttgtgctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctgt |
222 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| ||||| | | ||||||| | |||||| |||| ||||||| |||||| || | ||| |||||| |
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| T |
6849020 |
tgttggtgatgatggttgtgctgaacctttttccgcatttagctgtttgaacagtttgatcattcgttattgtagagttcttaatagacaaaacctctgc |
6849119 |
T |
|
| Q |
223 |
atatcaagtgttacacttaccaattt |
248 |
Q |
| |
|
|||||||||| ||||||| ||||||| |
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|
| T |
6849120 |
atatcaagtgctacacttgccaattt |
6849145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 407
Target Start/End: Original strand, 6844740 - 6844863
Alignment:
| Q |
284 |
ttgagttatctactccaagtcttttcacctttgactttgtttgttatgagggtattcctgttttgaaactatgtaggagcaaaatcaacctctcttctgt |
383 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||| | | | |||||||| | |||||||| | ||| | | || ||||||||||| |
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| T |
6844740 |
ttgagttatctactccaagtctttgcacctttgtctttgtttgtgaggggaatattcctgctctgaaactacatgggatagagagaaatctctcttctgt |
6844839 |
T |
|
| Q |
384 |
caaacatgtaaatattgaggtaag |
407 |
Q |
| |
|
|||||||||||| ||||| ||||| |
|
|
| T |
6844840 |
caaacatgtaaagattgatgtaag |
6844863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 407
Target Start/End: Original strand, 6889743 - 6889864
Alignment:
| Q |
286 |
gagttatctactccaagtcttttcacctttgactttgtttgttatgagggtattcctgttttgaaactatgtaggagcaaaatcaacctctcttctgtca |
385 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||| | ||| |||||| | |||||||| | ||| | | ||| ||||||||||||| |
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| T |
6889743 |
gagttatctactccaagtctttgcacctttgtctttgtttgtatcggaggttttcctgctctgaaactacatgggatagagagcaatctctcttctgtca |
6889842 |
T |
|
| Q |
386 |
aacatgtaaatattgaggtaag |
407 |
Q |
| |
|
|||||||||| ||||| ||||| |
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|
| T |
6889843 |
aacatgtaaagattgatgtaag |
6889864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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