View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14914_high_7 (Length: 321)

Name: NF14914_high_7
Description: NF14914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14914_high_7
NF14914_high_7
[»] chr2 (2 HSPs)
chr2 (25-305)||(31816340-31816620)
chr2 (58-305)||(31856863-31857110)
[»] chr8 (1 HSPs)
chr8 (161-305)||(20096533-20096677)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 25 - 305
Target Start/End: Complemental strand, 31816620 - 31816340
Alignment:
Q  25 aatagtgaatataatcaaaattcttccatttgtaggcagggatggattaactgcagaggaaactctaagcttaggaagttacaacgcattgttgaaaagt 124  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31816620 aatagtgaatataatcaaaattcttccatctgtaggcagggatggattaactgcagaggaaactctaagcttaggaagttacaacgcattgttgaaaagt 31816521  T
Q  125 tctctaccagaaaatttcaagccatacaagtcaaatgaagagacttttgaatcatctcatgaagtcttcaaatcagcttttccaagaggatttgcatggg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31816520 tctctaccagaaaatttcaagccatacaagtcaaatgaagagacttttgaatcatctcatgaagtcttcaaatcagcttttccaagaggatttgcatggg 31816421  T
Q  225 aagtgattaaagtttatacaggaccacctgaaattgctttcaagtttaggcattggggattttttgagggtccttttaagg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31816420 aagtgattaaagtttatacaggaccacctgaaattgctttcaagtttaggcattggggattttttgagggtccttttaagg 31816340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 58 - 305
Target Start/End: Original strand, 31856863 - 31857110
Alignment:
Q  58 aggcagggatggattaactgcagaggaaactctaagcttaggaagttacaacgcattgttgaaaagttctctaccagaaaatttcaagccatacaagtca 157  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||||||    
T  31856863 aggcagggagggattgactgcagaggaaactctaagcataggaagttataatgcattgttgaaaagttctctgccagaagatttcaagccatacaagtca 31856962  T
Q  158 aatgaagagacttttgaatcatctcatgaagtcttcaaatcagcttttccaagaggatttgcatgggaagtgattaaagtttatacaggaccacctgaaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  31856963 aatgaagagacttttgaatcatctcatgaagtcttcaaatcagcttttccaagaggatttgcatgggaaatcattaaagtttatacaggaccacctgaaa 31857062  T
Q  258 ttgctttcaagtttaggcattggggattttttgagggtccttttaagg 305  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  31857063 ttgctttcaagtttaggcattggggattttttgaaggtccatttaagg 31857110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 305
Target Start/End: Original strand, 20096533 - 20096677
Alignment:
Q  161 gaagagacttttgaatcatctcatgaagtcttcaaatcagcttttccaagaggatttgcatgggaagtgattaaagtttatacaggaccacctgaaattg 260  Q
    |||||||| |||||||||||||||||||  || | |||||| |||||||| ||||||||||||||||| || ||||||||    ||||| ||||| ||||    
T  20096533 gaagagacatttgaatcatctcatgaagcatttagatcagcatttccaaggggatttgcatgggaagtcatcaaagtttacggtggaccccctgagattg 20096632  T
Q  261 ctttcaagtttaggcattggggattttttgagggtccttttaagg 305  Q
    ||| ||||||||||||||||||||||||||| ||||||| |||||    
T  20096633 cttacaagtttaggcattggggattttttgaaggtccttataagg 20096677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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