View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14914_low_1 (Length: 486)
Name: NF14914_low_1
Description: NF14914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14914_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 35415681 - 35415946
Alignment:
| Q |
7 |
aacgaacccacctacaaatcagtgagtctgtttaagaaaacagacatactctcatgggttttagagaaaaccacaaacacgggaacaataccaaggcggt |
106 |
Q |
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| T |
35415681 |
aacggacccacctacaaatcagtgagtctgtttaagaaaacagacatactctcatgggttttagagaaaaccacaaacacgggaacaataccaaggaggt |
35415780 |
T |
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| Q |
107 |
gttgctggtgatgaacgacccagacgaccaccacaaaacccagatcaagcttcattgtggtctctgattggcgaacaacaagcagactacgaacgagaga |
206 |
Q |
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| T |
35415781 |
gttgctggtgatgaacgatccagaagaccaccacaaaacccagatcaagcttcattgtggtctctgattggcgaacaacaagcagactacgaacgagaga |
35415880 |
T |
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| Q |
207 |
aactggaatcgtatatacaggaaaccatagcagccaccaaatcgcggggacggtggcaccagaatc |
272 |
Q |
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| T |
35415881 |
aactggaatcgtatttacaggaaaccatagtagccaccaaatcgtggggacggtggcaccataatc |
35415946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 282 - 468
Target Start/End: Original strand, 35416235 - 35416414
Alignment:
| Q |
282 |
ccacaaggggtttggggtggcgctgctgtgaaaaccacgcacggaccacgaccaccaacaaaaagtctaaattgtgacaagcttggtttggattttggag |
381 |
Q |
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| T |
35416235 |
ccacaaggggtttggggtggcgctgctgtgaaaaccacgcacggaccacgaccaccaacaaaaagtctaaattgtgacaagcttggtttggattttggag |
35416334 |
T |
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| Q |
382 |
gagaaaaacagaaatgtaaagtctaaaggcaatgggttagatttggagcgtttaggttaaaaataaccatattaaagtcgtgtatgg |
468 |
Q |
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| T |
35416335 |
gagaagaacataaatgtaaagtctaaaggc-------tagatttggagcgtttaggttaaaaataaccatattaaagtcgtgtatgg |
35416414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 20114913 - 20114957
Alignment:
| Q |
233 |
atagcagccaccaaatcgcggggacggtggcaccagaatcctaac |
277 |
Q |
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| T |
20114913 |
atagtagccaccaaatcgcggagacggtggcaccgaaatcctaac |
20114957 |
T |
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