View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14914_low_11 (Length: 262)
Name: NF14914_low_11
Description: NF14914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14914_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 7374337 - 7374582
Alignment:
| Q |
7 |
tccaagaaaatcctcgtatctagtctagtattataaaatctcactcaatttttcttccaaaatcacacaacaaacaatcttaattctagaaacagaaaca |
106 |
Q |
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| T |
7374337 |
tccaacaacatcctcgtatctagtctagtattataaaatctcactcaatttttcttccaaaaacacacaacaaacaattttaattccagaaacagaaaca |
7374436 |
T |
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| Q |
107 |
ttactcacattgattaacaaaacatgtttcatttgaacaacaacagaacatcacaac---cttccttgtatgggacacaatggaattttcctcatt---a |
200 |
Q |
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| T |
7374437 |
ttactcacattgattaacaaaacatgtttcatttgaacaacaacagaacatcacaaccttcttccttgtacggcacccaatggaattatcctcgttacaa |
7374536 |
T |
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| Q |
201 |
caagaaagcacaatcaccgtcgaaggtggtttcaattcctgttcat |
246 |
Q |
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| T |
7374537 |
caagaaagcacaatcaccatcgaaggtggtttcaattccggttcat |
7374582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 246
Target Start/End: Complemental strand, 7279393 - 7279257
Alignment:
| Q |
119 |
attaacaaaacatgtttcatttgaacaacaaca---gaacatcacaaccttc---cttgtatgggacacaatggaattttcctcattacaa---gaaagc |
209 |
Q |
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| T |
7279393 |
attaacacaacatgtttcatttgaacaacaacaacagaacatcacaaccttcttccttgtacggcacccaatggaattatcctcgttacaacaagaaagc |
7279294 |
T |
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| Q |
210 |
acaatcaccgtcgaaggtggtttcaattcctgttcat |
246 |
Q |
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| T |
7279293 |
acaatcaccatcgaaggtggtttcaattccggttcat |
7279257 |
T |
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