View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14914_low_13 (Length: 249)
Name: NF14914_low_13
Description: NF14914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14914_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1587504 - 1587266
Alignment:
| Q |
1 |
actttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1587504 |
actttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaat |
1587405 |
T |
|
| Q |
101 |
tttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1587404 |
tttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttcct |
1587305 |
T |
|
| Q |
201 |
tatcatgnnnnnnnggtttcatcttcttcgtggcctttg |
239 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
1587304 |
tatcatgtttttttggtttgatcttcttcgtggtctttg |
1587266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1590719 - 1590957
Alignment:
| Q |
1 |
actttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1590719 |
actttcatccttttctatgtcggtgagaaaatcgactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaat |
1590818 |
T |
|
| Q |
101 |
tttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1590819 |
tttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttcct |
1590918 |
T |
|
| Q |
201 |
tatcatgnnnnnnnggtttcatcttcttcgtggcctttg |
239 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
1590919 |
tatcatgtttttttggtttgatcttcttcgtggtctttg |
1590957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 1580963 - 1580801
Alignment:
| Q |
42 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
141 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||| | ||||||||||| || |||||| ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
1580963 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc |
1580864 |
T |
|
| Q |
142 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc |
204 |
Q |
| |
|
|||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| |
|
|
| T |
1580863 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatc |
1580801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 1603852 - 1604014
Alignment:
| Q |
42 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
141 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||| | ||||||||||| || |||||| ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
1603852 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc |
1603951 |
T |
|
| Q |
142 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc |
204 |
Q |
| |
|
|||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| |
|
|
| T |
1603952 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatc |
1604014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 19270312 - 19270533
Alignment:
| Q |
11 |
ttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||| ||| ||| |||||||||||| || |
|
|
| T |
19270312 |
ttttctatgtcggtgagaaaatcaactttgacttctttaatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttaccca |
19270411 |
T |
|
| Q |
111 |
tgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnn |
210 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |||||| || |
|
|
| T |
19270412 |
tgatatatttgatatcagtgccattcaactctttgatcttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgttt |
19270511 |
T |
|
| Q |
211 |
nnnnggtttcatcttcttcgtg |
232 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19270512 |
ttttggtttcatcttcttcgtg |
19270533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 39615979 - 39616175
Alignment:
| Q |
8 |
tccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttac |
107 |
Q |
| |
|
||||||||| | | |||||||||| ||| || | |||||||||| ||||||||||||||| ||||| | || || |||||||||| ||||||| || |
|
|
| T |
39615979 |
tccttttctgtcttggtgagaaaaccaagttcgtcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttg |
39616078 |
T |
|
| Q |
108 |
acatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc |
204 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||| ||||||||||||| || | |||||| |||||||| |||||| | | ||||||||||||||| |
|
|
| T |
39616079 |
acatgatatatctgatatcagtgccattcaactccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatc |
39616175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University