View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14914_low_14 (Length: 239)

Name: NF14914_low_14
Description: NF14914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14914_low_14
NF14914_low_14
[»] chr4 (2 HSPs)
chr4 (23-192)||(38057448-38057617)
chr4 (4-32)||(19485701-19485729)
[»] chr6 (2 HSPs)
chr6 (1-31)||(2230475-2230505)
chr6 (1-29)||(13853588-13853616)
[»] chr5 (1 HSPs)
chr5 (1-30)||(37642061-37642090)
[»] chr2 (2 HSPs)
chr2 (3-32)||(30099174-30099203)
chr2 (1-29)||(38917517-38917545)
[»] chr1 (1 HSPs)
chr1 (1-30)||(16448215-16448244)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 38057448 - 38057617
Alignment:
Q  23 tataaaatatgaaacatgtacgtttggaaagaaagnnnnnnnnntggaatatgaaacatannnnnnnnatttgcactggcactagctgaaatagaaaaca 122  Q
    ||||||||||||||||||||||||| |||||||||         ||||||||||||||||        ||||||||| ||| |||||||||||| |||||    
T  38057448 tataaaatatgaaacatgtacgtttagaaagaaagaaaaaaatatggaatatgaaacatattttttttatttgcactagcaatagctgaaataggaaaca 38057547  T
Q  123 tgtttatattgtaatgttccgagtgaaggtgtccaactctatattatcaatattgtcagttgagttagtc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38057548 tgtttatattgtaatgttccgagtgaaggtgtccaactctatattatcaatattgtcagttgagttagtc 38057617  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 19485701 - 19485729
Alignment:
Q  4 taaataggaccggagggagtataaaatat 32  Q
    |||||||||||||||||||||||||||||    
T  19485701 taaataggaccggagggagtataaaatat 19485729  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2230475 - 2230505
Alignment:
Q  1 ttataaataggaccggagggagtataaaata 31  Q
    |||||||||||||||||||||||||||||||    
T  2230475 ttataaataggaccggagggagtataaaata 2230505  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 13853616 - 13853588
Alignment:
Q  1 ttataaataggaccggagggagtataaaa 29  Q
    |||||||||||||||||||||||||||||    
T  13853616 ttataaataggaccggagggagtataaaa 13853588  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 37642061 - 37642090
Alignment:
Q  1 ttataaataggaccggagggagtataaaat 30  Q
    ||||||||||||||||||||||||||||||    
T  37642061 ttataaataggaccggagggagtataaaat 37642090  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 30099203 - 30099174
Alignment:
Q  3 ataaataggaccggagggagtataaaatat 32  Q
    ||||||||||||||||||||||||||||||    
T  30099203 ataaataggaccggagggagtataaaatat 30099174  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 38917545 - 38917517
Alignment:
Q  1 ttataaataggaccggagggagtataaaa 29  Q
    |||||||||||||||||||||||||||||    
T  38917545 ttataaataggaccggagggagtataaaa 38917517  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 16448215 - 16448244
Alignment:
Q  1 ttataaataggaccggagggagtataaaat 30  Q
    ||||||||||||||||||||||||||||||    
T  16448215 ttataaataggaccggagggagtataaaat 16448244  T

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