View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14914_low_15 (Length: 233)

Name: NF14914_low_15
Description: NF14914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14914_low_15
NF14914_low_15
[»] chr1 (1 HSPs)
chr1 (47-217)||(2774153-2774323)
[»] chr4 (3 HSPs)
chr4 (98-180)||(39276304-39276386)
chr4 (56-120)||(25885889-25885953)
chr4 (96-139)||(20988901-20988944)
[»] chr7 (3 HSPs)
chr7 (95-176)||(12473544-12473625)
chr7 (96-135)||(43911321-43911362)
chr7 (94-131)||(2525121-2525158)
[»] chr8 (4 HSPs)
chr8 (94-175)||(41470031-41470112)
chr8 (97-135)||(14354616-14354654)
chr8 (97-135)||(8173024-8173062)
chr8 (94-173)||(43408492-43408571)
[»] chr5 (1 HSPs)
chr5 (96-177)||(22028655-22028736)
[»] chr3 (3 HSPs)
chr3 (66-179)||(38684811-38684924)
chr3 (96-179)||(37083794-37083877)
chr3 (150-183)||(51573100-51573133)
[»] chr2 (3 HSPs)
chr2 (94-129)||(2774384-2774419)
chr2 (94-135)||(5946262-5946303)
chr2 (96-136)||(33625506-33625546)
[»] scaffold0010 (1 HSPs)
scaffold0010 (150-179)||(166593-166622)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 2774153 - 2774323
Alignment:
Q  47 ctacaaggatctgcttgacaagcacgataagctagcttacaatttaaagcttataagctcatatgactaaaaaagactcatttggtaaccgtcnnnnnnn 146  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  2774153 ctacaaggatctgcttgacaagcacaataagctagcttacaatttaaagcttataagctcatatgactaaaaaagactcatttggtaaccgtcttttttt 2774252  T
Q  147 catgagcttataacttatttttactagcttataagctcacataactaaaatacacccatttggtaatcttc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2774253 catgagcttataacttatttttactagcttataagctcacataactaaaatacacccatttggtaatcttc 2774323  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 39276304 - 39276386
Alignment:
Q  98 tataagctcatatgactaaaaaagactcatttggtaaccgtcnnnnnnncatgagcttataacttatttttactagcttataa 180  Q
    |||||||||||||||||||||| ||||| |||| |||| |||       || |||||||||||||||||||||||||||||||    
T  39276304 tataagctcatatgactaaaaatgactcgtttgataactgtcattttctcacgagcttataacttatttttactagcttataa 39276386  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 25885889 - 25885953
Alignment:
Q  56 tctgcttgacaagcacgataagctagcttacaatttaaagcttataagctcatatgactaaaaaa 120  Q
    |||||||| ||||||  ||||||||||||| | | || | |||||||||||||||||||||||||    
T  25885889 tctgcttggcaagcataataagctagcttatactgtataacttataagctcatatgactaaaaaa 25885953  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 20988944 - 20988901
Alignment:
Q  96 cttataagctcatatgactaaaaaagactcatttggtaaccgtc 139  Q
    ||||||||||||| |||||||||||||| | |||||||||||||    
T  20988944 cttataagctcatttgactaaaaaagacacgtttggtaaccgtc 20988901  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 12473625 - 12473544
Alignment:
Q  95 gcttataagctcatatgactaaaaaagactcatttggtaaccgtcnnnnnnncatgagcttataacttatttttactagctt 176  Q
    |||||||||||||| |||||||||||||| | ||||||||||||        |||||||||||| |||||||||||||||||    
T  12473625 gcttataagctcatttgactaaaaaagacccgtttggtaaccgtaattttctcatgagcttatagcttatttttactagctt 12473544  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 43911362 - 43911321
Alignment:
Q  96 cttataagctcatat--gactaaaaaagactcatttggtaac 135  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  43911362 cttataagctcatatatgactaaaaaagactcatttggtaac 43911321  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 2525121 - 2525158
Alignment:
Q  94 agcttataagctcatatgactaaaaaagactcatttgg 131  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  2525121 agcttataagctcatatgactaaaatagactcgtttgg 2525158  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 41470031 - 41470112
Alignment:
Q  94 agcttataagctcatatgactaaaaaagactcatttggtaaccgtcnnnnnnncatgagcttataacttatttttactagct 175  Q
    ||||||||||||||||| |||||||||||| | ||||||||| |||       || |||||||||||||| |||||||||||    
T  41470031 agcttataagctcatataactaaaaaagacccgtttggtaactgtcattttctcacgagcttataacttaattttactagct 41470112  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 14354654 - 14354616
Alignment:
Q  97 ttataagctcatatgactaaaaaagactcatttggtaac 135  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  14354654 ttataagctcatatgactaaaaaagacccatttggtaac 14354616  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 8173062 - 8173024
Alignment:
Q  97 ttataagctcatatgactaaaaaagactcatttggtaac 135  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  8173062 ttataagctcatatgactaaaaaagaccgatttggtaac 8173024  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 43408492 - 43408571
Alignment:
Q  94 agcttataagctcatatgactaaaaaagactcatttggtaaccgtcnnnnnnncatgagcttataacttatttttactag 173  Q
    ||||||| || ||||| |||||||||||| || |||||||||| ||       ||||||||||||||||||||| |||||    
T  43408492 agcttattagttcatacgactaaaaaagagtcgtttggtaaccatcattttctcatgagcttataacttattttcactag 43408571  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 22028655 - 22028736
Alignment:
Q  96 cttataagctcatatgactaaaaaagactcatttggtaaccgtcnnnnnnncatgagcttataacttatttttactagctta 177  Q
    ||||||||||||| |||||||||||||| | |||||||||||||       ||  |||||||| ||||||||||||| ||||    
T  22028655 cttataagctcatttgactaaaaaagacccgtttggtaaccgtcactttctcacaagcttatagcttatttttactaactta 22028736  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 38684924 - 38684811
Alignment:
Q  66 aagcacgataagctagcttacaatttaaagcttataagctcatatgactaaaaaagactcatttggtaaccgtcnnnnnnncatgagcttataacttatt 165  Q
    |||||| |||||||||| || | || | ||||||| || |||||||||| |||||||  | |||||||||||||       || |||||| ||| |||||    
T  38684924 aagcacaataagctagcatatagttaatagcttatcagttcatatgactgaaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatt 38684825  T
Q  166 tttactagcttata 179  Q
    ||||||||||||||    
T  38684824 tttactagcttata 38684811  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 37083794 - 37083877
Alignment:
Q  96 cttataagctcatatgactaaaaaagactcatttggtaaccgtcnnnnnnncatgagcttataacttatttttactagcttata 179  Q
    ||||||||||||| ||| |||||||||| | || |||||| |||       || ||||||||| ||||||||||||||||||||    
T  37083794 cttataagctcatttgattaaaaaagacacgttaggtaactgtcactttctcacgagcttatagcttatttttactagcttata 37083877  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 51573100 - 51573133
Alignment:
Q  150 gagcttataacttatttttactagcttataagct 183  Q
    ||||||| ||||||||||||||||||||||||||    
T  51573100 gagcttaaaacttatttttactagcttataagct 51573133  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 2774384 - 2774419
Alignment:
Q  94 agcttataagctcatatgactaaaaaagactcattt 129  Q
    |||||||||||||||||||||||||||||| |||||    
T  2774384 agcttataagctcatatgactaaaaaagacccattt 2774419  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 5946262 - 5946303
Alignment:
Q  94 agcttataagctcatatgactaaaaaagactcatttggtaac 135  Q
    ||||||||||||| |||||||||||||||||  |||||||||    
T  5946262 agcttataagctcgtatgactaaaaaagacttgtttggtaac 5946303  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 33625506 - 33625546
Alignment:
Q  96 cttataagctcatatgactaaaaaagactcatttggtaacc 136  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  33625506 cttataagctcattagactaaaaaagacccatttggtaacc 33625546  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 179
Target Start/End: Original strand, 166593 - 166622
Alignment:
Q  150 gagcttataacttatttttactagcttata 179  Q
    ||||||||||||||||||||||||||||||    
T  166593 gagcttataacttatttttactagcttata 166622  T

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