View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14914_low_3 (Length: 420)
Name: NF14914_low_3
Description: NF14914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14914_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 420
Target Start/End: Original strand, 45565730 - 45566139
Alignment:
| Q |
11 |
acatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaggttcatgttgcgccacaaccaaagtcctatcatctttcttcaagtt |
110 |
Q |
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| T |
45565730 |
acatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgttgcgccacaaccaaagtcctatcatctttcttcaagtt |
45565829 |
T |
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| Q |
111 |
tgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtgtcaccatccttaagccaaatcacctttgctatttgtttc |
210 |
Q |
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| T |
45565830 |
tgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtatcaccatccttaagccaaatcacctttgctatttgtttc |
45565929 |
T |
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| Q |
211 |
caaaatgcttctgcttgtgccaataatcctcccattcaaatatgtacctccttagagcgcccaatttgggaagcttgcacgctgcccctaaatctatcta |
310 |
Q |
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| T |
45565930 |
caaaatgcttctgcttgtgccaataatcctctcattcaaatatgtacctccttagagcgcgcaatttgggaagcttgcacgctgcccctaaatctctcta |
45566029 |
T |
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| Q |
311 |
actcatcccgacattcatcaatggaaacttgatacttactttggagctttcttcccggttcgttcatatcctctgtacaattcttcagcctgagcaaaat |
410 |
Q |
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| T |
45566030 |
actcatcccgacattcatcaatggaaactcgatacttactttggagctttcttccccgttcgttcatatcctctgtacaattcttcagcctgagcaaaat |
45566129 |
T |
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| Q |
411 |
ccctccatcc |
420 |
Q |
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| T |
45566130 |
ccctccatcc |
45566139 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 8179388 - 8179449
Alignment:
| Q |
172 |
tcaccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaa |
233 |
Q |
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| T |
8179388 |
tcaccatccttcagccaaatcaccttagctctttgcttccaaaacgcttcttcttgtgccaa |
8179449 |
T |
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