View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14914_low_6 (Length: 326)
Name: NF14914_low_6
Description: NF14914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14914_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 2 - 308
Target Start/End: Complemental strand, 43157559 - 43157253
Alignment:
| Q |
2 |
ctataacacaattaagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43157559 |
ctataacacaattaagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaa |
43157460 |
T |
|
| Q |
102 |
aatattgtatattccattcaaaatacaaagtcaatgtatggcagaagctgctataaaagtgctgctataattcagcaggnnnnnnntgggacaaacccca |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43157459 |
aatattgtatattccattcaaaatacaaagtcaatgtatggcagaagctgctataaaagtgctgctataattcagcaggaaaaaaatgggacaaacccca |
43157360 |
T |
|
| Q |
202 |
aaaaatacccaacatggggaactaaagttgctgctataacaacttagcagaggtgtggctgcacaatcctaagacagcacactaacaagatccaaaataa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43157359 |
aaaaatacccaacatggggaactaaagttgctgctataacaacttagcagaggtgtggctgcacaatcctaagacagcacactaacaggatccaaaataa |
43157260 |
T |
|
| Q |
302 |
cactact |
308 |
Q |
| |
|
|| |||| |
|
|
| T |
43157259 |
cattact |
43157253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 2 - 308
Target Start/End: Original strand, 38251983 - 38252289
Alignment:
| Q |
2 |
ctataacacaattaagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38251983 |
ctataacacaattaagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaa |
38252082 |
T |
|
| Q |
102 |
aatattgtatattccattcaaaatacaaagtcaatgtatggcagaagctgctataaaagtgctgctataattcagcaggnnnnnnntgggacaaacccca |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38252083 |
aatattgtatattccattcaaaatacaaagtcaatgtatggcagaagctgctataaaagtgctgctataattcagcaggaaaaaaatgggacaaacccca |
38252182 |
T |
|
| Q |
202 |
aaaaatacccaacatggggaactaaagttgctgctataacaacttagcagaggtgtggctgcacaatcctaagacagcacactaacaagatccaaaataa |
301 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38252183 |
aaaaatacccaccatggggaactaaagttgctgctataacaacttagcagaggtgtggctgcacaatcctaagacagcacactaacaggatccaaaataa |
38252282 |
T |
|
| Q |
302 |
cactact |
308 |
Q |
| |
|
|| |||| |
|
|
| T |
38252283 |
cattact |
38252289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 38251920 - 38251998
Alignment:
| Q |
15 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaag |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38251920 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctgctataacacaattaag |
38251998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 43157622 - 43157544
Alignment:
| Q |
15 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaag |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43157622 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctgctataacacaattaag |
43157544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 2 - 294
Target Start/End: Complemental strand, 11474983 - 11474691
Alignment:
| Q |
2 |
ctataacacaattaagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474983 |
ctataacacaattaagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaa |
11474884 |
T |
|
| Q |
102 |
aatattgtatattccattcaaaatacaaagtcaatgtatggcagaagctgctataaaagtgctgctataattcagcaggnnnnnnntgggacaaacccca |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11474883 |
aatattgtatattccattcaaaatacaaagtcaatgtatggcagaagctgctataaaagtgctgctataattcagcaggaaaaaaatgggacaaacccca |
11474784 |
T |
|
| Q |
202 |
aaaaatacccaacatggggaactaaagttgctgctataacaacttagcagaggtgtggctgcacaatcctaagacagcacactaacaagatcc |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11474783 |
aaaaatacccaacatggggaactaaagttgctgctataacaacttagcagaggtgtggctgcacaatcctaagacagcacactaacaggatcc |
11474691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 2 - 294
Target Start/End: Complemental strand, 11503023 - 11502731
Alignment:
| Q |
2 |
ctataacacaattaagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11503023 |
ctataacacaattaagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaa |
11502924 |
T |
|
| Q |
102 |
aatattgtatattccattcaaaatacaaagtcaatgtatggcagaagctgctataaaagtgctgctataattcagcaggnnnnnnntgggacaaacccca |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11502923 |
aatattgtatattccattcaaaatacaaagtcaatgtatggcagaagctgctataaaagtgctgctataattcagcaggaaaaaaatgggacaaacccca |
11502824 |
T |
|
| Q |
202 |
aaaaatacccaacatggggaactaaagttgctgctataacaacttagcagaggtgtggctgcacaatcctaagacagcacactaacaagatcc |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11502823 |
aaaaatacccaacatggggaactaaagttgctgctataacaacttagcagaggtgtggctgcacaatcctaagacagcacactaacaggatcc |
11502731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 46 - 308
Target Start/End: Original strand, 28245191 - 28245453
Alignment:
| Q |
46 |
gcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
145 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245191 |
gcataaatagaaacaaacaaatgacagaggctgctataacacaattaggctaacaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
28245290 |
T |
|
| Q |
146 |
aagctgctataaaagtgctgctataattcagcaggnnnnnnntgggacaaaccccaaaaaatacccaacatggggaactaaagttgctgctataacaact |
245 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28245291 |
aagctgctataaaactactgctataattcagcaggaaaaaaatgggacaaaccccaaaaaatacccaccatggggaactaaagttgctgctataacaact |
28245390 |
T |
|
| Q |
246 |
tagcagaggtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactact |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
28245391 |
tagcagaggtgtggctgcacaatcctaagacagcacactaacaggatccaaaataacattact |
28245453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 11475046 - 11474968
Alignment:
| Q |
15 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaag |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11475046 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctgctataacacaattaag |
11474968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 11503086 - 11503008
Alignment:
| Q |
15 |
aagatttgttacacactctaaaattatgctagcataaatagaaacgaacaaatgacagaggctgctataacacaattaag |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11503086 |
aagatttgttacacactctaaaattatgctagca-aaatagaaacgaacaaatgacagaggctgctataacacaattaag |
11503008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 46 - 308
Target Start/End: Original strand, 19306846 - 19307108
Alignment:
| Q |
46 |
gcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
145 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19306846 |
gcataaatagaaacgaacaaatgatagaggctgctataacacaattaggctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
19306945 |
T |
|
| Q |
146 |
aagctgctataaaagtgctgctataattcagcaggnnnnnnntgggacaaaccccaaaaaatacccaacatggggaactaaagttgctgctataacaact |
245 |
Q |
| |
|
|||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
19306946 |
aagctgctataacactactgctataattcagcaggaaaaaaatgggacaaaccccaaaaaatacccaccatggggaactaaagctgctgctataacaact |
19307045 |
T |
|
| Q |
246 |
tagcagaggtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactact |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19307046 |
tagcagaggtgtggctgcacaatcctaagacagcacactaacaggatccaaaataacactact |
19307108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 46 - 308
Target Start/End: Original strand, 10123418 - 10123680
Alignment:
| Q |
46 |
gcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
145 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10123418 |
gcataaatagaaacgaacaaatgatagaggctgctataacacaattaggctaacaaaatattgtatattgcattcaaaatacaaagtcaatgtatggcag |
10123517 |
T |
|
| Q |
146 |
aagctgctataaaagtgctgctataattcagcaggnnnnnnntgggacaaaccccaaaaaatacccaacatggggaactaaagttgctgctataacaact |
245 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10123518 |
aagctgctataaaactactgctataattcagcaggaaaaaaatgggacaaaccgcaaaaaatacccaccatggggaactaaagttgctgctataacaact |
10123617 |
T |
|
| Q |
246 |
tagcagaggtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactact |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10123618 |
tagcagaggtgtggctgcacaatcctaagacagcacactaacaggatccaaaataacactact |
10123680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 46 - 308
Target Start/End: Complemental strand, 25382994 - 25382733
Alignment:
| Q |
46 |
gcataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
145 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382994 |
gcataaatagaatcgaacaaatgacagaggctgctataacacaattaggctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcag |
25382895 |
T |
|
| Q |
146 |
aagctgctataaaagtgctgctataattcagcaggnnnnnnntgggacaaaccccaaaaaatacccaacatggggaactaaagttgctgctataacaact |
245 |
Q |
| |
|
| |||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
25382894 |
aggctgctataacactactgctataattcagcagg-aaaaaatgggacaaaccccaaaaaatacccaccatggggaactaaagctgctgctataacaact |
25382796 |
T |
|
| Q |
246 |
tagcagaggtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactact |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
25382795 |
tagcagaggtgtggctgcacaatcctaagacagcacactaacaggagccaaaataacactact |
25382733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 47 - 308
Target Start/End: Original strand, 22490433 - 22490693
Alignment:
| Q |
47 |
cataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcaga |
146 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22490433 |
cataaatacaaacgaacaaatgacagaggctgctataacacaattaggctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcaga |
22490532 |
T |
|
| Q |
147 |
agctgctataaaagtgctgctataattcagcaggnnnnnnntgggacaaaccccaaaaaatacccaacatggggaactaaagttgctgctataacaactt |
246 |
Q |
| |
|
||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
22490533 |
agctgctataacactactgctataattcagcagg-aaaaaatgggacaaaccccaaaaaatacccaccatggggaaccaaagctgctgctataacaactt |
22490631 |
T |
|
| Q |
247 |
agcagaggtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactact |
308 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| |
|
|
| T |
22490632 |
agtagaggtgtggctgcacaatcctaagacatcacactaacagcagccaaaataacactact |
22490693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 47 - 241
Target Start/End: Complemental strand, 48795572 - 48795375
Alignment:
| Q |
47 |
cataaatagaaacgaacaaatgacagaggctgctataacacaattaagctagcaaaatattgtatattccattcaaaatacaaagtcaatgtatggcaga |
146 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48795572 |
cataaatagaaacgaacaaatgacagaggttgttataacacaattaggctagcacaatattgtatattccattcaaaatacaaagtcaatgtatggcaga |
48795473 |
T |
|
| Q |
147 |
agctgctat---aaaagtgctgctataattcagcaggnnnnnnntgggacaaaccccaaaaaatacccaacatggggaactaaagttgctgctataac |
241 |
Q |
| |
|
|||||||| || | | |||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
48795472 |
ggctgctataacaacactactgctataattcagtaggaaaaaaatgggacaaaccccaaaaaatacccaccatggggaactaaatctgatgctataac |
48795375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 48794634 - 48794560
Alignment:
| Q |
234 |
gctataacaacttagcagaggtgtggctgcacaatcctaagacagcacactaacaagatccaaaataacactact |
308 |
Q |
| |
|
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|
|
| T |
48794634 |
gctataacaacttagcagaggcgtggctgcacaatcctaagacagcacattaacagaagccaaaataacactact |
48794560 |
T |
|
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