View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14915_high_1 (Length: 943)

Name: NF14915_high_1
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14915_high_1
NF14915_high_1
[»] chr8 (11 HSPs)
chr8 (18-827)||(31645514-31646323)
chr8 (26-204)||(31637300-31637478)
chr8 (215-357)||(31651402-31651544)
chr8 (564-752)||(31636351-31636536)
chr8 (840-933)||(31644650-31644743)
chr8 (204-340)||(31637087-31637223)
chr8 (213-357)||(31656176-31656320)
chr8 (217-336)||(31629825-31629944)
chr8 (46-204)||(31630036-31630188)
chr8 (49-174)||(31651626-31651751)
chr8 (46-142)||(31656437-31656533)
[»] chr5 (1 HSPs)
chr5 (50-173)||(9105454-9105578)
[»] chr7 (1 HSPs)
chr7 (883-933)||(12824143-12824193)


Alignment Details
Target: chr8 (Bit Score: 739; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 18 - 827
Target Start/End: Complemental strand, 31646323 - 31645514
Alignment:
Q  18 gtataaatgcagagaaaatgcataaagaacgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646323 gtataaatgcagagaaaatgcataaagaacgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctc 31646224  T
Q  118 tgttgataaaagttccagagcttgtacgtgcactaaatgcaaaagaaatatgtaaacaaaaggtttggcatcaatgaagtggcaatgaaaaagagaaatc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31646223 tgttgataaaagttccagagcttgtacgtgcactaaatgcaaaagaaatatgtaaacaaaaggtttggcatcaatgaagtggcaatgaaaaagaaaaatc 31646124  T
Q  218 taacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttatgcatactaggcttggctatattgattagatgttcacattcctctttt 317  Q
    ||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31646123 taacctgttgtccacactctttcccgtttcatcgtcaaca---gtcgatttatgcatactaggcttggctatattgattagatgttcacattcctctttt 31646027  T
Q  318 gtctgcttagatcaatcagctaagccttagtatttgggaattgtaaacaatctaacattataatacattaatactatactaaaagattaactttgaagtt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  31646026 gtctgcttagatcaatcagctaagccttagtatttgggaattgtaaacaatctaacattataatacattaatactatattaaaatattaactttgaagtt 31645927  T
Q  418 tgaac-atgtcgatatataattaaagaatataagcatatcatgtgtaaagtgatattccagggtttcgaacaatgcctctcttctaaaacttcaacaggt 516  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31645926 tgaacgatgtcgatatataattaaagaatataggcatatcatgtgtaaagtgatattccagggtttcgaacaatgcctctcttctaaaacttcaacaggt 31645827  T
Q  517 tataagagaagtcaaaagcagcagcaatccatcttagcacatgtttgtttttatatatttttccctcatgatattcaaacctttcctaaaccaagaaaat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31645826 tataagagaagtcaaaagcagcagcaatccatcttagcacatgtttgtttttatatatttttccctcatgatattcaaacctttcctaaaccaagaaaat 31645727  T
Q  617 atcttgacctctaaaaatatcactgaataagctatttttgtttgatgaagtgtttatgggtgagggttagttaatctgaaacataaatgatgcggttat- 715  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  31645726 atcttgacctctaaaaatatcactgaataagctatttttgtatgatgaagtgtttttgggtgagggttagttaatctgaaacataaatgatgcggttata 31645627  T
Q  716 tttgattttgaaattgaaatgttatagatcatctatcatattattttttcaattttc-aaaattttagatatctaccaaaatagagacttttggtatgaa 814  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31645626 attgattttgaaattgaaatcttatagatcatctatcatattattttttcaattttcaaaaattttagatatctaccaaaatagagacttttggtatgaa 31645527  T
Q  815 taattattgaaaa 827  Q
    |||||||||||||    
T  31645526 taattattgaaaa 31645514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 31637478 - 31637300
Alignment:
Q  26 gcagagaaaatgcataaagaacgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgata 125  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||  |||| ||||||||||| |||||||| ||||    
T  31637478 gcagacaaaatgcataaagaacacacctacaggtataaaagtaaaatcagcaattcttttctcgatatcgctcaaaattttatcatatcctctgtcgata 31637379  T
Q  126 aaagttccagagcttgtacgtgcactaaatgcaaaagaaatatgtaaacaaaaggtttggcatcaatgaagtggcaatg 204  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  31637378 aaagttccagagcttgttcgtgcactaaatgcaaaagaaatatgtaagcaaaaggtttgacatgaatgaagtggcaatg 31637300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 215 - 357
Target Start/End: Complemental strand, 31651544 - 31651402
Alignment:
Q  215 atctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttatgcatactaggcttggctatattgattagatgttcacattcctct 314  Q
    |||||||| |||||||||||  ||||| ||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31651544 atctaaccggctgtccacaccatttcctgtttcctcgtcaataacagccgatttatgcatactaggctttgctatattgattagatgttcacattcctct 31651445  T
Q  315 tttgtctgcttagatcaatcagctaagccttagtatttgggaa 357  Q
    |||||||||| ||||||||||||| |||||||| |||| ||||    
T  31651444 tttgtctgctcagatcaatcagcttagccttagcatttaggaa 31651402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 564 - 752
Target Start/End: Complemental strand, 31636536 - 31636351
Alignment:
Q  564 tttttatatatttttccctcatgatattcaaacctttcctaaac--caagaaaatatcttgacctctaaaaatatcactgaataagctatttttgtttga 661  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| | |||||| |||||||||||||||    
T  31636536 tttttttatctttttccctcatgatattcaaacctttcctaaacgacaagaaaatatcttgacctctaaaaatattattgaata-gctatttttgtttga 31636438  T
Q  662 tgaagtgtttatgggtgagggttagttaatctgaaacataaatgatgcggttat-tttgattttgaaattgaaatgttata-gatcatctatc 752  Q
    |||||||||| ||||||||  |||||| || ||||||||||||      |||||  |||||||||||||||||||| |||| |||||||||||    
T  31636437 tgaagtgtttttgggtgagtattagttgatttgaaacataaat------gttataattgattttgaaattgaaatggtatacgatcatctatc 31636351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 840 - 933
Target Start/End: Complemental strand, 31644743 - 31644650
Alignment:
Q  840 ttgtgacttgggtgtcaaggatatcgtctttgagaccgacatccttggtctttttcatatggccatgaaaggtcatgccacttgtactcctttg 933  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31644743 ttgtgacttgggtgtgaaggatatcgtctttgagactgacatccttggtctttttcatatggccatgaaaggtcatgccacttgtactcctttg 31644650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 204 - 340
Target Start/End: Complemental strand, 31637223 - 31637087
Alignment:
Q  204 gaaaaagagaaatctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttatgcatactaggcttggctatattgattagatgtt 303  Q
    |||||||| |||||||||||||||| |||||||||||| |||  ||| ||||||||||||||||| |||| |  ||||||||||||||||||||||||||    
T  31637223 gaaaaagaaaaatctaacctgctgttcacactctttcctgttgtatcatcaacaacagtcgatttctgcacatcaggcttggctatattgattagatgtt 31637124  T
Q  304 cacattcctcttttgtctgcttagatcaatcagctaa 340  Q
    ||||||||||||||| ||||| |||| || |||||||    
T  31637123 cacattcctcttttgcctgctaagattaaccagctaa 31637087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 213 - 357
Target Start/End: Complemental strand, 31656320 - 31656176
Alignment:
Q  213 aaatctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttatgcatactaggcttggctatattgattagatgttcacattcct 312  Q
    |||||||||||||||| || ||||||||| ||||  ||||||| |||   ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  31656320 aaatctaacctgctgttcagactctttcctgttttctcgtcaataacttccgatttatgcatactaggctttgctatattgattagatgttcgcattcct 31656221  T
Q  313 cttttgtctgcttagatcaatcagctaagccttagtatttgggaa 357  Q
    |||||||||||| ||||||||||| | |||||||| |||| ||||    
T  31656220 cttttgtctgctcagatcaatcagtttagccttagcatttaggaa 31656176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 217 - 336
Target Start/End: Complemental strand, 31629944 - 31629825
Alignment:
Q  217 ctaacctgctgtccacactctttcccgtttcatcgtcaacaacagtcgatttatgcatactaggcttggctatattgattagatgttcacattcctcttt 316  Q
    ||||||||||||||  ||||||||| |||||||  ||||||||||  ||||| |||||||| ||||||||| ||||||||||||||||||||||||  ||    
T  31629944 ctaacctgctgtccttactctttcctgtttcattatcaacaacagatgatttttgcatacttggcttggctgtattgattagatgttcacattccttctt 31629845  T
Q  317 tgtctgcttagatcaatcag 336  Q
    ||||||||||||||||||||    
T  31629844 tgtctgcttagatcaatcag 31629825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 46 - 204
Target Start/End: Complemental strand, 31630188 - 31630036
Alignment:
Q  46 acgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacg 145  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||  ||||||||  | |||||||||||||||||| ||    
T  31630188 acgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattcctcacaatttcatcacctcctctgtcaagaaaagttccagagcttgttcg 31630089  T
Q  146 tgcactaaatgcaaaagaaatatgtaaacaaaaggtttggcatcaatgaagtggcaatg 204  Q
    | | ||||||||      |||||||||||||||||||   ||||||||||||| |||||    
T  31630088 tacgctaaatgc------aatatgtaaacaaaaggttaaccatcaatgaagtgacaatg 31630036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 31651751 - 31651626
Alignment:
Q  49 cacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacgtgc 148  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| ||| |||| |||||  |||||| || | ||||| |||||||||||| ||| |    
T  31651751 cacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagctccagagcttgtccgttc 31651652  T
Q  149 actaaatgcaaaagaaatatgtaaac 174  Q
     |||||| || ||  |||||||||||    
T  31651651 cctaaatacagaatgaatatgtaaac 31651626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 31656533 - 31656437
Alignment:
Q  46 acgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgt 142  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||| ||||  | ||||||  | ||| ||||||||||||||    
T  31656533 acgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcaccttctctgtcaagaaatgttccagagcttgt 31656437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 9105454 - 9105578
Alignment:
Q  50 acctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacgtgca 149  Q
    ||||||||| ||||||||||| || |||||| ||| |||||||||||||| ||| |||||| |||| |||   | ||| ||||||||||| |||||  |     
T  9105454 acctacaggaataaaagtaaagtcggcaatttttttctcaatattcctcacaatcttatcacgtcccctggccagaaatgttccagagctagtacgcact 9105553  T
Q  150 ctaaatgca-aaagaaatatgtaaa 173  Q
    ||| ||| | |||||||||||||||    
T  9105554 ctacatgtagaaagaaatatgtaaa 9105578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 883 - 933
Target Start/End: Complemental strand, 12824193 - 12824143
Alignment:
Q  883 cttggtctttttcatatggccatgaaaggtcatgccacttgtactcctttg 933  Q
    |||| ||||||||||||||||| |||||||||| |||||| ||||| ||||    
T  12824193 cttgctctttttcatatggccaagaaaggtcataccacttatactcatttg 12824143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University