View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_high_12 (Length: 420)
Name: NF14915_high_12
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 18299341 - 18298951
Alignment:
| Q |
16 |
gaattcttttaattaagaaattcattttaaagtgtgaaatgatgaataaattcatggttaattttaggtttagtcacttttttgtcccttaatttaaatt |
115 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18299341 |
gaattcttttaattaagcaattcattttaaagtgtgagatgatgaataaattcatggttaattttaggtttagtcacttttttgtcccttaatttaaatt |
18299242 |
T |
|
| Q |
116 |
atgaggttcaatttgttctcttaactctaaaaggtgtcaagttagttcattaaattagttccatactcttgccgcaagttaaccattttcattcaaattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18299241 |
atgaggttcaatttgttctcttaactctaaaaggtgtcaagttagttcattaaattagttccatactcttgccgcaagttaaccattttcattcaaattc |
18299142 |
T |
|
| Q |
216 |
acataaccattgtgtaatttggcattttactattcattcaacttccctaaatatcaattgttccaatatattaacgggttatcgacaaaggataatttgt |
315 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18299141 |
acataaccatcgtgtaatttggcattttactattcactcaacttccctaaatatcaattgttccaatatattaacgggttatcgacaaaggataatttat |
18299042 |
T |
|
| Q |
316 |
tggtgtacggtattctttttcatgacaatcagctatatgtaattgggtgtggtgttctagagactgttcaacatttgtttttgtcttgtcc |
406 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |
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| T |
18299041 |
tggtgtacggtattctttctcatgacaatcacctatatgtaattgggtgtggtgttctagagacggctcaacatttgtttttatcttgtcc |
18298951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 403
Target Start/End: Original strand, 2816633 - 2816743
Alignment:
| Q |
292 |
ggttatcgacaaaggataatttgttggtgtacggtattctttttcatgacaatcagctatatgtaattgggtgtggtgttctagagactgttcaacattt |
391 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||| ||||||||| ||| ||| ||| | | ||||||||| ||| ||||||| |||| |||| |
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| T |
2816633 |
ggttatcaacaaaggataatttgttggtgcgcggtattctttctcatgacaaccagttatgtgtgact-ggtgtggtggtctggagactgctcaatattt |
2816731 |
T |
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| Q |
392 |
gtttttgtcttg |
403 |
Q |
| |
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||||||||||| |
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| T |
2816732 |
atttttgtcttg |
2816743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 39647249 - 39647359
Alignment:
| Q |
298 |
cgacaaaggataatttgttggtgtacggtattctttttcatgacaatcagctatatgtaattgggtgtggtgttctagagactgttcaacatttgttttt |
397 |
Q |
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||||||||||||||||||||||| || ||||||||| ||| ||||||||| ||| ||| ||||||||||||| | | ||||||| |||||||||| |||| |
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| T |
39647249 |
cgacaaaggataatttgttggtgcactgtattctttctcacgacaatcagttatgtgtgattgggtgtggtggtttggagactgctcaacatttgatttt |
39647348 |
T |
|
| Q |
398 |
gtcttgtcctt |
408 |
Q |
| |
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|||||||||| |
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|
| T |
39647349 |
atcttgtcctt |
39647359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 303 - 406
Target Start/End: Original strand, 9605638 - 9605741
Alignment:
| Q |
303 |
aaggataatttgttggtgtacggtattctttttcatgacaatcagctatatgtaattgggtgtggtgttctagagactgttcaacatttgtttttgtctt |
402 |
Q |
| |
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|||||||||||| ||||| ||||| ||||| ||| || |||||| ||| ||| | ||||||||||| ||| |||| || |||||||||||||||||||| |
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| T |
9605638 |
aaggataatttgatggtgcgcggtactctttctcacgataatcagttatgtgtgactgggtgtggtggtctggagattgctcaacatttgtttttgtctt |
9605737 |
T |
|
| Q |
403 |
gtcc |
406 |
Q |
| |
|
|||| |
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|
| T |
9605738 |
gtcc |
9605741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 303 - 406
Target Start/End: Original strand, 9833209 - 9833312
Alignment:
| Q |
303 |
aaggataatttgttggtgtacggtattctttttcatgacaatcagctatatgtaattgggtgtggtgttctagagactgttcaacatttgtttttgtctt |
402 |
Q |
| |
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|||||||||||| ||||| ||||| ||||| ||| || |||||| ||| ||| | ||||||||||| ||| |||| || |||||||||||||||||||| |
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| T |
9833209 |
aaggataatttgatggtgcgcggtactctttctcacgataatcagttatgtgtgactgggtgtggtggtctggagattgctcaacatttgtttttgtctt |
9833308 |
T |
|
| Q |
403 |
gtcc |
406 |
Q |
| |
|
|||| |
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|
| T |
9833309 |
gtcc |
9833312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 396
Target Start/End: Original strand, 23826637 - 23826733
Alignment:
| Q |
299 |
gacaaaggataatttgttggtgtacggtattctttttcatgacaatcagctatatgtaattgggtgtggtgttctagagactgttcaacatttgtttt |
396 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||| |||||||| ||| ||| | | ||||||||| | | || |||| |||||||||||||| |
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| T |
23826637 |
gacaaaggataatttgttggtg-gtggtattctttctcacgacaatcaattatgtgtgacttggtgtggtggtttggaaactgctcaacatttgtttt |
23826733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 406
Target Start/End: Complemental strand, 32734497 - 32734383
Alignment:
| Q |
292 |
ggttatcgacaaaggataatttgttggtgtacggtattctttttcatgacaatcagctatatgtaattgggtgtggtgttctagagactgttcaacattt |
391 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||| ||||||||||||| ||| ||| | ||||| || | ||| |||||| | ||||||| |
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| T |
32734497 |
ggttaccgacaaaggataatttgttggtgcgcgatattctttctcatgacaatcagttatgtgtgactgggtacggcggtctggagactactaaacattt |
32734398 |
T |
|
| Q |
392 |
gtttttgtcttgtcc |
406 |
Q |
| |
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||||||||||||||| |
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| T |
32734397 |
gtttttgtcttgtcc |
32734383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 24957554 - 24957477
Alignment:
| Q |
292 |
ggttatcgacaaaggataatttgttggtgtacggtattctttttcatgacaatcagctatatgtaattgggtgtggtg |
369 |
Q |
| |
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||||| ||||||||||||||||||||| | |||||||||| ||| ||||||||| ||| ||| | ||||||||||| |
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| T |
24957554 |
ggttaccgacaaaggataatttgttggagcgtggtattctttctcacgacaatcagttatgtgtgactgggtgtggtg |
24957477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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