View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14915_high_18 (Length: 382)
Name: NF14915_high_18
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 6564075 - 6564443
Alignment:
| Q |
1 |
catagtagcagtttcactaagaaaaggaatttttctgtccttatctatgtctgtcaacaacatttaattgttagcaatatgcatgtaacacagtaataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6564075 |
catagtagcagtttcactaagaaaaggaatttttatgtccttatctatgtctgtcaacaacatttaattgttagcaatatgcatgtaacacagtaataaa |
6564174 |
T |
|
| Q |
101 |
tatcattaaacatctcagttcagaatttgtttcattgttgtcatcattatcccatattggtactttacacaagcaacaactgtaacactttcattagtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6564175 |
tatcattaaacatctcagttcagaatttgtttcattgttgtcatcattatcccatattggtactttacacaagcaacaactgtaacactttcattagtca |
6564274 |
T |
|
| Q |
201 |
ttatatgaggtcgtatatgtaacaccttaaacaaacctcgtccttctcatttgttttcaccttcttcttccatattattttattatttgtataaaacaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6564275 |
ttatatgaggtcgtatatgtaacaccttaaacaaacctcgtccttctcatttgttttcaccatcttcttccatatttttttattatttgtataaaacaaa |
6564374 |
T |
|
| Q |
301 |
aaccattttttcttctttttcccgctccatgaattgtataaaacctttctcagtttctctttttctctg |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6564375 |
aaccattttttcttctttttcccgctccatgaattgtataaaacctttctcagtttctctttttctctg |
6564443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University