View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14915_high_20 (Length: 368)
Name: NF14915_high_20
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 28214379 - 28214712
Alignment:
| Q |
17 |
ttgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaa |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28214379 |
ttgttgtcaggacagttttgcctcatctgactaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaa |
28214478 |
T |
|
| Q |
117 |
tgaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggttttnnnnnnngtgtga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28214479 |
tgaaatcgcaaccgatttttccaatgttgtgttctcctttagattatcaagaaaccaacagatctcattagtcatattcaaggttttataaaaagtgtga |
28214578 |
T |
|
| Q |
217 |
tcgcaatttcagctgcgacatcatggtttttgaagtctttgtgaccacacttgaggtcgcatcaggtcaactgtcaacagttcgcaataacatgattgca |
316 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28214579 |
tcgtaatttcagctgcgacatcatggtttttgaagtctttgtgaccacagttgaggtcgcatcaggtcaactgtcaacagttcgcaataacatgattgca |
28214678 |
T |
|
| Q |
317 |
atgcggccaagatacaaacctttttcataatata |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28214679 |
atgcggccaagatacaaacctttttcataatata |
28214712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 28221905 - 28221572
Alignment:
| Q |
17 |
ttgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaa |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
28221905 |
ttgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtagagcctttgctgaa |
28221806 |
T |
|
| Q |
117 |
tgaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggttttnnnnnnngtgtga |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28221805 |
tgaaatcgcaacagatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggttttataaaaagtgtga |
28221706 |
T |
|
| Q |
217 |
tcgcaatttcagctgcgacatcatggtttttgaagtctttgtgaccacacttgaggtcgcatcaggtcaactgtcaacagttcgcaataacatgattgca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28221705 |
tcgcaatttcagctgcgacatcatggtttttgaagtctctgtggccacagttgaggtcgcatcaggtcaactgtcaacagttcgcaataacaggattgca |
28221606 |
T |
|
| Q |
317 |
atgcggccaagatacaaacctttttcataatata |
350 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
28221605 |
atgcggccaagatacaaacctttttcatattata |
28221572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 32310456 - 32310190
Alignment:
| Q |
18 |
tgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaat |
117 |
Q |
| |
|
||||||||||||||||| |||| ||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32310456 |
tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacagcctttgctgaat |
32310357 |
T |
|
| Q |
118 |
gaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggttttnnnnnnngtgtg-- |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
32310356 |
gaaatcgcaaccgatttttccaatgttgtgtcctcctttagattatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatgtgtgat |
32310257 |
T |
|
| Q |
216 |
atcgcaatttcagctgcgacatcatggtttttgaagtctttgtgaccacacttgaggtcgcatcagg |
282 |
Q |
| |
|
||| |||| |||||| |||||||| ||||||| | ||||||||||||||| |||||| |||||||| |
|
|
| T |
32310256 |
atcacaatctcagctacgacatcaaggtttttcatgtctttgtgaccacagttgaggctgcatcagg |
32310190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 32564364 - 32564630
Alignment:
| Q |
18 |
tgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaat |
117 |
Q |
| |
|
||||||||||||||||| |||| ||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
32564364 |
tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacaacctttgctgaat |
32564463 |
T |
|
| Q |
118 |
gaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggttttnnnnnnngtgtg-- |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
32564464 |
gaaatcgcaaccgatttttccaatgttgtgtcctcctttagattatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatgtgtgat |
32564563 |
T |
|
| Q |
216 |
atcgcaatttcagctgcgacatcatggtttttgaagtctttgtgaccacacttgaggtcgcatcagg |
282 |
Q |
| |
|
||| |||| |||||| |||||||| ||||||| | ||||||||||||||| |||||| |||||||| |
|
|
| T |
32564564 |
atcacaatctcagctacgacatcaaggtttttcatgtctttgtgaccacagttgaggctgcatcagg |
32564630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 32786819 - 32787075
Alignment:
| Q |
18 |
tgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaat |
117 |
Q |
| |
|
||||||||||||||||| |||| ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32786819 |
tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaaa |
32786918 |
T |
|
| Q |
118 |
gaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggtttt--nnnnnnngtgtg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||| | ||||||||||||| ||| | |
|
|
| T |
32786919 |
gaaatcgcaaccgatttttccaatgttgtgtcctcctgtagtttatcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatatgtggg |
32787018 |
T |
|
| Q |
216 |
atcgcaatttcagctgcgacatcatggtttttgaagtctttgtgaccacacttgagg |
272 |
Q |
| |
|
||| |||| |||||| |||||||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
32787019 |
atcacaatctcagctacgacatcagggtttttgatgtctttgtgaccacagttgagg |
32787075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 32814027 - 32814212
Alignment:
| Q |
18 |
tgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaat |
117 |
Q |
| |
|
||||||||||||||||| |||| ||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
32814027 |
tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggttgccctgttccttgaaagtcgtacaacctttgctgaat |
32814126 |
T |
|
| Q |
118 |
gaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaaccaacagatctcattagtcatattcaaggtttt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||| | ||| ||||||||| |
|
|
| T |
32814127 |
gaaatcgcaaccgatttttccaatgttgtgtcctcctttaaattatcaagaaaccaacagatctcattagccttatacaaggtttt |
32814212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 53 - 282
Target Start/End: Complemental strand, 32306288 - 32306057
Alignment:
| Q |
53 |
aaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaatgaaatcgcaaccgatttttccaatgttgtgtgcac |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||| | | |
|
|
| T |
32306288 |
aaatcgagaggtatactcgggtctggttgccctgttccttgaaagtcgtacaacctttgctgaatgaaatcacaaccgatttttccaaggttgtgtcctc |
32306189 |
T |
|
| Q |
153 |
cttcagattatcaagaaaccaacagatctcattagtcatattcaaggttt--tnnnnnnngtgtgatcgcaatttcagctgcgacatcatggtttttgaa |
250 |
Q |
| |
|
|| | |||||| ||||||||||||||||||||| | |||||||||||| ||| |||| |||| |||||| |||||||| ||||||||| |
|
|
| T |
32306188 |
ctgtatattatccagaaaccaacagatctcattaaccctattcaaggtttgaaaaattacgtgagatcacaatctcagctacgacatcagggtttttgat |
32306089 |
T |
|
| Q |
251 |
gtctttgtgaccacacttgaggtcgcatcagg |
282 |
Q |
| |
|
||||||| ||||||| |||||| |||||||| |
|
|
| T |
32306088 |
gtctttgcgaccacaattgaggctgcatcagg |
32306057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 32316684 - 32316568
Alignment:
| Q |
55 |
atcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttgctgaatgaaatcgcaaccgatttttccaatgttgtgtgcacct |
154 |
Q |
| |
|
||||||||||||| ||| |||| |||| | |||||||| ||||| ||||| |||||||| |||||||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
32316684 |
atcgagaggtatattcgagtctagttgtcatgttcctttaaagtcgtacaacctttgctaaatgaaatcgcaaccgattttttcaatgttgtgtcctcct |
32316585 |
T |
|
| Q |
155 |
tcagattatcaagaaac |
171 |
Q |
| |
|
| | ||||||||||||| |
|
|
| T |
32316584 |
ttatattatcaagaaac |
32316568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 28174706 - 28174552
Alignment:
| Q |
15 |
tcttgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatact-cgggtctggttgccctgttccttgaaagttgtacagcctttgct |
113 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||| ||| ||||| |||| ||||| | ||||||||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
28174706 |
tcttgttgtctggacagtttagcctcatctgactaagaaaatcaagagctatacgacaggtctggttgcgctgttcctttaaagttgtacagactttgtc |
28174607 |
T |
|
| Q |
114 |
gaatgaaatcgcaaccgatttttccaatgttgtgtgcaccttcagattatcaagaaac |
171 |
Q |
| |
|
||| ||||| |||| |||||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
28174606 |
aaatcaaatcacaactgattttgccaatgttgtgt---ccttcacattatcaagaaac |
28174552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 28171502 - 28171391
Alignment:
| Q |
12 |
tattcttgttgtcaggacagttttgcctgatctgaccaaggaaatcgagaggtatactcgggtctggttgccctgttccttgaaagttgtacagcctttg |
111 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| || ||| ||||| ||| |||||||| ||||||||||| |||||||||||||| ||||||| ||| | |
|
|
| T |
28171502 |
tattcttgttgtcttgacagttttgcctcatcttactaagcaaatcaagaagtatactcaggtctggttgcgctgttccttgaaagatgtacagtcttcg |
28171403 |
T |
|
| Q |
112 |
ctgaatgaaatc |
123 |
Q |
| |
|
|||||||||| |
|
|
| T |
28171402 |
tcgaatgaaatc |
28171391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 28183099 - 28183014
Alignment:
| Q |
12 |
tattcttgttgtcaggacagttttgcctgatctgaccaaggaaatcgagagg--tatactcgggtctggttgccctgttccttgaa |
95 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| ||||||||| ||| | ||||||| | || ||||||| ||||||||||| |
|
|
| T |
28183099 |
tattcttgttgtctggacagttttgcctcatctgactaaggaaatcaagaagtatatactcagatccggttgccttgttccttgaa |
28183014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 32814248 - 32814298
Alignment:
| Q |
232 |
cgacatcatggtttttgaagtctttgtgaccacacttgaggtcgcatcagg |
282 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
32814248 |
cgacatcagggtttttgatgtctttgtgaccacagttgaggctgcatcagg |
32814298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University