View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14915_high_25 (Length: 324)

Name: NF14915_high_25
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14915_high_25
NF14915_high_25
[»] chr5 (2 HSPs)
chr5 (31-228)||(43446493-43446690)
chr5 (1-37)||(43446697-43446733)
[»] chr7 (2 HSPs)
chr7 (31-228)||(46571356-46571553)
chr7 (31-204)||(9182313-9182486)
[»] chr8 (1 HSPs)
chr8 (31-228)||(43593448-43593645)
[»] chr6 (2 HSPs)
chr6 (60-204)||(28364722-28364866)
chr6 (189-228)||(28364663-28364702)
[»] chr3 (2 HSPs)
chr3 (31-138)||(47861551-47861658)
chr3 (170-228)||(47861495-47861553)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 31 - 228
Target Start/End: Complemental strand, 43446690 - 43446493
Alignment:
Q  31 ttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgat 130  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43446690 ttcatttatttgttaggacttattagggttaaataaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgat 43446591  T
Q  131 ggtgtagattctcctctccaaaacaaaatattttcaataagaggcatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43446590 ggtgtagattctcctctccaaaacaaaatattttcaataagacacatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 43446493  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43446697 - 43446733
Alignment:
Q  1 ttgataacgataaataagtgataagcataattcattt 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  43446697 ttgataacgattaataagtgataagcataattcattt 43446733  T

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Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 46571356 - 46571553
Alignment:
Q  31 ttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgat 130  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  46571356 ttcatttatttgttaggacttattagggttaaattaactaggttgctatgttatgcatgtatgtattacgtagagttgttctacattgtttgaatttgat 46571455  T
Q  131 ggtgtagattctcctctccaaaacaaaatattttcaataagaggcatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46571456 ggtgtagattctcctctccaaaacaaaatattttcaataagagacataaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 46571553  T

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Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 9182313 - 9182486
Alignment:
Q  31 ttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgat 130  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  9182313 ttcatttatttgttaggacttattaggattaaattaactaggttgctatgttatgaatgtatgtattatgtagagtttatctacattgtttgaatttgat 9182412  T
Q  131 ggtgtagattctcctctccaaaacaaaatattttcaataagaggcatgaatcaaacttaccattgaaccaattt 204  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  9182413 ggtgtagattctcctctcaaaaataaaatattttcaataagagacatgaatcaaacttaccattaaaccaattt 9182486  T

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Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 43593448 - 43593645
Alignment:
Q  31 ttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgat 130  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| ||    
T  43593448 ttcatttatttgttaggacttattagggttaaattaactaggttgctatgttatacatgtatgtattatgtagagttgatctacatagtttgaatttaat 43593547  T
Q  131 ggtgtagattctcctctccaaaacaaaatattttcaataagaggcatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 228  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43593548 ggtgtagattctcctctccaaaacaaaatattttccgtaagagacatgaatcaaacttaccattgaaccaatttattattgggataattgattttttg 43593645  T

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Target: chr6 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 60 - 204
Target Start/End: Complemental strand, 28364866 - 28364722
Alignment:
Q  60 taaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgatggtgtagattctcctctccaaaacaaaat 159  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  28364866 taaattaactaggttgctatgttatgcatgtatgtattatgtagagttgatctacattgtttgaatttgatgatgtagattctcctctccaaaacataat 28364767  T
Q  160 attttcaataagaggcatgaatcaaacttaccattgaaccaattt 204  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  28364766 attttcaataagagacatgaatcaaacttaccattgaaccaattt 28364722  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 28364702 - 28364663
Alignment:
Q  189 accattgaaccaatttattattgggataattgattgtttg 228  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  28364702 accattgaactaatttattattgggataattgattgtttg 28364663  T

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Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 47861658 - 47861551
Alignment:
Q  31 ttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgat 130  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||||||    
T  47861658 ttcatttatttgttaggacttattagggttaaattaactaggttgctacgttacgcatgtatgtattatgtaaagttgatctacattgtttgaatttgat 47861559  T
Q  131 ggtgtaga 138  Q
    ||||||||    
T  47861558 ggtgtaga 47861551  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 47861553 - 47861495
Alignment:
Q  170 agaggcatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 228  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47861553 agagacatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg 47861495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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