View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14915_high_31 (Length: 270)

Name: NF14915_high_31
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14915_high_31
NF14915_high_31
[»] chr3 (1 HSPs)
chr3 (16-255)||(53158753-53158992)
[»] chr7 (1 HSPs)
chr7 (16-253)||(45632996-45633233)
[»] chr6 (1 HSPs)
chr6 (16-255)||(7369315-7369554)
[»] chr2 (1 HSPs)
chr2 (19-255)||(39906792-39907014)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 53158753 - 53158992
Alignment:
Q  16 gatgaaaataaatatctcttgacaaaatctcgatggtattgaagattactgcaaaactaaaatctctatcctatatgaggaatgagacccaagagttcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53158753 gatgaaaataaatatctcttgacaaaatctcgatggtattgaagattactgcaaaactaaaatctctatcctatatgaggaatgagacccaagagttcaa 53158852  T
Q  116 catcgttcaaaatgataaatataatcgtcaatcttacaaaattcaaagatatccatttttattacataattcatgccttccacgttggtcttagagttgg 215  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  53158853 catcgttcaaaatgataaatataatcatcaatcatacaaaattcaaagatatccattttgcttacataattcatgccttccacgttggtcttagagttgg 53158952  T
Q  216 aggcaaaacttgtcattacagttatgaaaccgctattttt 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53158953 aggcaaaacttgtcattacagttatgaaaccgctattttt 53158992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 45633233 - 45632996
Alignment:
Q  16 gatgaaaataaatatctcttgacaaaatctcgatggtattgaagattactgcaaaactaaaatctctatcctatatgaggaatgagacccaagagttcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45633233 gatgaaaataaatatctcttgacaaaatctcgatggtattgaagattactgcaaaactaaaatctctatcctatatgaggaatgagacccaagagttcaa 45633134  T
Q  116 catcgttcaaaatgataaatataatcgtcaatcttacaaaattcaaagatatccatttttattacataattcatgccttccacgttggtcttagagttgg 215  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  45633133 catcgttcaaaatgataaatataatcatcaatcatacaaaattcaaagatatccattttgcttacataattcatgccttccacattggtcttagagttgg 45633034  T
Q  216 aggcaaaacttgtcattacagttatgaaaccgctattt 253  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  45633033 aggcaaaacttatcattacagttatgaaaccgctattt 45632996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 7369554 - 7369315
Alignment:
Q  16 gatgaaaataaatatctcttgacaaaatctcgatggtattgaagattactgcaaaactaaaatctctatcctatatgaggaatgagacccaagagttcaa 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7369554 gatgaaaataaatatctcttgacaaaatcttgatggtattgaagattactgcaaaactaaaatctctatcctatatgaggaatgagacccaagagttcaa 7369455  T
Q  116 catcgttcaaaatgataaatataatcgtcaatcttacaaaattcaaagatatccatttttattacataattcatgccttccacgttggtcttagagttgg 215  Q
    ||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |    
T  7369454 catcgttcaaagtgataaatataatcatcaatcatacaaaattcaaagatatccattttacttacataattcatgccttccacgttggtcttagagttag 7369355  T
Q  216 aggcaaaacttgtcattacagttatgaaaccgctattttt 255  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  7369354 aggcaaaacttgtcattacagttatgaaaccactattttt 7369315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 39907014 - 39906792
Alignment:
Q  19 gaaaataaatatctcttgacaaaatctcgatggtattgaagattactgcaaaactaaaatctctatcctatatgaggaatgaga-cccaagagttcaaca 117  Q
    |||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||  |||||||| |||||||||| || |    
T  39907014 gaaactaaacatctcttgacaaaatcttgatggtattgaagattgctgcaaaactaaaatgtctatcctatatggtgaatgagaccccaagagttgaaga 39906915  T
Q  118 tcgttcaaaatgataaatataatcgtcaatcttacaaaattcaaagatatccatttttattacataattcatgccttccacgttggtcttagagttggag 217  Q
    |||||||||| ||||||||||||| |||||| || ||               || ||  ||||| ||| |||||||||||||||||||||||| || |||    
T  39906914 tcgttcaaaacgataaatataatcatcaatcataaaa---------------atattgcttacaaaatccatgccttccacgttggtcttagaattagag 39906830  T
Q  218 gcaaaacttgtcattacagttatgaaaccgctattttt 255  Q
    |||||||||||||||||||  |||||||| ||||||||    
T  39906829 gcaaaacttgtcattacagacatgaaaccactattttt 39906792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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