View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_high_34 (Length: 261)
Name: NF14915_high_34
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_high_34 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 51114586 - 51114347
Alignment:
| Q |
22 |
acatttcaagcatgcattctatctaacttctaatccaacacataaataaggttcaaacaccaatggacatgaataattagcagaatattttctcagatat |
121 |
Q |
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| T |
51114586 |
acatttcaagcatgcattctatctaacttctaatccaacaaataaataaggttcaaacaccaatggacatgaataatttgcagaatattttctcagatat |
51114487 |
T |
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| Q |
122 |
ctnnnnnnngaaagagataatcaagaattaaatttgtactagaataatattaacaccaaaccatagccaaaatttacagcttgcaagttgaatcaaaata |
221 |
Q |
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| T |
51114486 |
ctaaaaaaagaaagagataatcaagaattaaatttgtactagaataatattaacaccaaaccatagccaaaatttacagcttgcaagttgaatcaaaata |
51114387 |
T |
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| Q |
222 |
aaaaccgagcttgaatgcttaactaaattgttacctttcc |
261 |
Q |
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| T |
51114386 |
aaaaccgagcttgaatgcttaactaaattgttacctttcc |
51114347 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 546367 - 546429
Alignment:
| Q |
199 |
agcttgcaagttgaatcaaaataaaaaccgagcttgaatgcttaactaaattgttacctttcc |
261 |
Q |
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| T |
546367 |
agcttgcaagttgaatcaaaataaagatcaagcttgactgctaaactaaattgtttcctttcc |
546429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 552568 - 552621
Alignment:
| Q |
131 |
gaaagagataatcaagaattaaatttgtactagaataatattaacaccaaaccatag |
187 |
Q |
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| T |
552568 |
gaaagagacaatcaagaattaaatttgca---gaataatattaacaccaaaccatag |
552621 |
T |
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