View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_high_35 (Length: 250)
Name: NF14915_high_35
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6435267 - 6435032
Alignment:
| Q |
1 |
gcaattggagctgcatttttagaatgaggagtgagatacgtaggtgtaacttaattgataacatggaaaatgatttgctatatgagaaattgtgtaactt |
100 |
Q |
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| T |
6435267 |
gcaattggagctgcatttttagaatgaggagtgagatacgtaggtgtaacttaattgataacatggaaaatgacttgctatatgagaaattgtgcaactt |
6435168 |
T |
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| Q |
101 |
-attgataacatggaaaatgacttgctatatgagaaattatctagataatgttttgtatcaaattaagttatttctatgaaatagaataannnnnnnnag |
199 |
Q |
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| T |
6435167 |
aattgataacatggaaaatgacttgctatatgagaaattatctagataatgttttgtatcaaattaagttatttctatgaaatataataattttttttag |
6435068 |
T |
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| Q |
200 |
tttatcatatatcccctccgctattaccaaggttat |
235 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6435067 |
tttatcatatatcccctccgctattaccaaggttat |
6435032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 29430092 - 29429947
Alignment:
| Q |
91 |
tgtgtaactta-ttgataacatggaaaatgacttgctatatgagaaattatctagataatgttttgtatcaaattaagttatttctatgaaatagaataa |
189 |
Q |
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| T |
29430092 |
tgtgtaacttaattgataacatggaaaatgacttgctaaatgagaaattatctagataatattttgtatcaaattaagttatttctatgaaatagaataa |
29429993 |
T |
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| Q |
190 |
nnnnnnnnagtttatcatatatcccctccgctattaccaaggttat |
235 |
Q |
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| T |
29429992 |
ttttttttggtttatcataaatcccctccgctattatcaaggttat |
29429947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 29430132 - 29430044
Alignment:
| Q |
3 |
aattggagctgcatttttagaatgaggagtgagatacgtaggtgtaacttaattgataacatggaaaatgatttgctatatgagaaatt |
91 |
Q |
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|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
29430132 |
aattggagctacatttttagaatgaagagtgagatacgtatgtgtaacttaattgataacatggaaaatgacttgctaaatgagaaatt |
29430044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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