View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_high_40 (Length: 237)
Name: NF14915_high_40
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6564030 - 6563812
Alignment:
| Q |
1 |
aggataaatctattaatagtttatcaaaaaa--tggataaatgtataataaaaaatgacaatgtactagtataannnnnnnncggttaagtagaatagtt |
98 |
Q |
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| T |
6564030 |
aggataaatctatta-tagtttatcaaaaaaaatggataaatgtataataaaaaatgacaatgtacta---taatttttttttg-ttaagtgaactaatt |
6563936 |
T |
|
| Q |
99 |
gctacaaattacattttttaaagttaataattgaggtatttaggattcgaacctcatcatctatatatagtataatatgcaacgtatcaatcaagttact |
198 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |
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| T |
6563935 |
gctacaaattacattttttaaagttaataattaaggtatttaggattcgaacctcatcatctatatataatataatatgcaacgtatctatcaacttact |
6563836 |
T |
|
| Q |
199 |
tattcttttataaaagatagaatt |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
6563835 |
tattcttttataaaagatagaatt |
6563812 |
T |
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