View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14915_high_41 (Length: 237)
Name: NF14915_high_41
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_high_41 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 9020176 - 9019987
Alignment:
| Q |
47 |
acttgtcactggccgtctctttccaaacaataaaggaaacacatttttgtgattcataatagcattggaaaagatctgatta-------------atggt |
133 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9020176 |
acttgtcaccggccgtctctttccaaacaataaaggaaacacatttttgtgattcataatagcattggaaaagatctgattaatggataagccacatggt |
9020077 |
T |
|
| Q |
134 |
taaatggtccctggaag-tttttattttccgagcaaacacgataggataatttgattccagggatcaattgaaaacctcctattttatat |
222 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9020076 |
taaatggtccttgtaagttttttattttccgagcaaacacaataggataatttgattccggggatcaattgaaaacctcctattttatat |
9019987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 9020249 - 9020205
Alignment:
| Q |
8 |
aaccaaattctttcgtaattaatcataactataaaatttacttgt |
52 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
9020249 |
aaccaaattctttcgtagttaatcataactgtaaaatttacttgt |
9020205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University