View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_high_46 (Length: 201)
Name: NF14915_high_46
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_high_46 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 37877101 - 37876899
Alignment:
| Q |
1 |
ggaaactgcggagatcgaattcatcttaaacatcgtgatttgtttgtcagtgattgacagacggtaggattttcagctagctaggtgtagatatgaggaa |
100 |
Q |
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| T |
37877101 |
ggaaactgcggagatcaaattcatcttaaacatcgtgatttgtttgtctgtgattgacagacggtaggattttcagctagctaggtgtagatatgaggaa |
37877002 |
T |
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| Q |
101 |
acaggattagaattttatttgtaggttacacatgctgc---ttctcggagttacattgtataaaatagtaccagcagtcaaataatatgggtggctttaa |
197 |
Q |
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| T |
37877001 |
acaggattagaattttctttgtaggttacacatgctgctggttctcggagttacattgtat-aaatagtaccagcagtcaaataatatgggtggctttaa |
37876903 |
T |
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| Q |
198 |
gggt |
201 |
Q |
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|||| |
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| T |
37876902 |
gggt |
37876899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 23894580 - 23894782
Alignment:
| Q |
1 |
ggaaactgcggagatcgaattcatcttaaacatcgtgatttgtttgtcagtgattgacagacggtaggattttcagctagctaggtgtagatatgaggaa |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23894580 |
ggaaactgcggagatcaaattcatcttaaacatcgtgatttgtttgtctgtgattgacagacggtaggattttcagctagctaggtgtagatatgaggaa |
23894679 |
T |
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| Q |
101 |
acaggattagaattttatttgtaggttacacatgctgc---ttctcggagttacattgtataaaatagtaccagcagtcaaataatatgggtggctttaa |
197 |
Q |
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| T |
23894680 |
acaggattagaattttctttgtaggttacacatgctgctggttctcggagttacattgtat-aaatagtaccagcagtcaaataatatgggtggctttaa |
23894778 |
T |
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| Q |
198 |
gggt |
201 |
Q |
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|||| |
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| T |
23894779 |
gggt |
23894782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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