View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_10 (Length: 492)
Name: NF14915_low_10
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Complemental strand, 43607329 - 43606864
Alignment:
| Q |
19 |
ggctttgcaattgcatgatgatgatgtttaacgttaaccttctccagaaaccgtgaacgacggagatatgatgctacccaagcaaaggaagaaagcgagg |
118 |
Q |
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| T |
43607329 |
ggctttgcaattgcatgatgatgatgtttaacgttaaccttctccagaaaccgtgaacgacggagatatgatgctacccaagcaaaggaagaaagcgagg |
43607230 |
T |
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| Q |
119 |
taataccgaaagcaccggatgtcaaaaatccggcgatggccaaaccaatgacgacagccgcagctaacaaaatggggctgaagaaaatgaacagaggggt |
218 |
Q |
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| T |
43607229 |
taataccgaaagcaccggatgtcaaaaatccggcgatggccaaaccaatgacgacagccgcagctaacaaaatggggctgaagaaaatgaacagaggggt |
43607130 |
T |
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| Q |
219 |
ggtgacagcgaggccgacaacggtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaaggtacaagagtagcaagtactatgagttgt |
318 |
Q |
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| T |
43607129 |
ggtgacagcgaggccgacaacggtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaaggtacaagagtagcaagtactatgagttgt |
43607030 |
T |
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| Q |
319 |
gaagtagaaggatgaaatcccttccttgttcttgtttgggtgaatgttatgggttggttnnnnnnnnnnnnnnnnnnnnngtggtaaccgtagtagtcat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43607029 |
gaagtagaaggatgaaatcccttccttgttcttgtttgggtgaatgttatgggttggtt---ctgctgctgctgctgctggtggtaaccgtagtagtcat |
43606933 |
T |
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| Q |
419 |
ccctgagagtttcagccattgaattaggaatatgtcttagactcttagtttagttcagtgcagctcact |
487 |
Q |
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| T |
43606932 |
ccctgagagtttcagccattgaattaggaatatgtcttagactcttagtttagttcagttcagttcact |
43606864 |
T |
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