View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_13 (Length: 406)
Name: NF14915_low_13
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_13 |
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| [»] scaffold0082 (1 HSPs) |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 24 - 402
Target Start/End: Original strand, 37882234 - 37882609
Alignment:
| Q |
24 |
actgcaacgtgaaatactatatctcctctcttcctccaaaatctcctgccatggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacggga |
123 |
Q |
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| T |
37882234 |
actgcaacgtgaaatactatatctcctctcctcttccaaaatctcctgccatggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacggga |
37882333 |
T |
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| Q |
124 |
gggtaccacattgacattggtcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgc |
223 |
Q |
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| T |
37882334 |
gggtaccacattgacattggtcatggtagagaagaaaaacggcgcacggaccgtactcgagcttcggatcaatgtccccagaagcaaggagtacgcccgc |
37882433 |
T |
|
| Q |
224 |
gtgtttttaagagaacaccgaaaagaccaagtttcccttgtttccaactcactatctcttaatatccttaacttgttaaaattttctctaatctatgaaa |
323 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37882434 |
gtgtttttaagagaacaccgaaaaaaccaagtttcccttgtttccaactcactatctcttaatatccttaacttgttaaaattttctctaatctatgaaa |
37882533 |
T |
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| Q |
324 |
tnnnnnnnngatgattatcaataaacgttttatatgaagactgtgaaggttgttgcaatacaacacaggttctgctcgt |
402 |
Q |
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| T |
37882534 |
t---aaaaagatgattatcaataaacgttttatatgaagactgtgaaggttgttgcaatacaacacagttgctgctcgt |
37882609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 14862 - 14752
Alignment:
| Q |
143 |
gtcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacacc |
242 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14862 |
gtcatggtagagaagaaaaacggcgcacggaccgtactcgagcttcggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacacc |
14763 |
T |
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| Q |
243 |
gaaaagaccaa |
253 |
Q |
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||||| ||||| |
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| T |
14762 |
gaaaaaaccaa |
14752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 41903 - 41833
Alignment:
| Q |
73 |
catggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccacattgacattgg |
143 |
Q |
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| T |
41903 |
catggggtcgacctgtaaacaaggtaaacccaatgggaaccaaaaacgggagggtaccacattgatattgg |
41833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 17604618 - 17604524
Alignment:
| Q |
144 |
tcatggtcgagaagaaaaacggcgcacggaccgtactcgagctttggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaa |
238 |
Q |
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||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||| |||||| ||||| ||||| |||||||||||||| |
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| T |
17604618 |
tcatggtagagaagaaaaacggcacatagaccgtactcgagcttcagatcaatgtccccataagcaaagagtatgcccgattgtttttaagagaa |
17604524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 51195835 - 51195790
Alignment:
| Q |
143 |
gtcatggtcgagaagaaaaacggcgcacggaccgtactcgagcttt |
188 |
Q |
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|||||||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
51195835 |
gtcatggtagagaagaaaaaccgcgcacggaccgtactccagcttt |
51195790 |
T |
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