View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14915_low_15 (Length: 399)
Name: NF14915_low_15
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 5316920 - 5316536
Alignment:
| Q |
1 |
aaaatggaaaataaaaaagaatgaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5316920 |
aaaatggaaaataaaaaagaatgaagaataaggattaagcataccataagataagaccatgaccatgtcactatctattacagttggaattctgtgagca |
5316821 |
T |
|
| Q |
101 |
acggttataaccgtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaacta |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5316820 |
acggttataaccgtgcattctgaaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaacta |
5316721 |
T |
|
| Q |
201 |
gaatcctgttcctcttaagtagaactcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatcgctcactgcaaaacttatcag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5316720 |
gaatcctgttcctcttaagtagaactcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatcactcactgcaaaacttatcag |
5316621 |
T |
|
| Q |
301 |
aattagactttcatgccgtatttattcgttgcaaaatcatatattgaaccataaaaatgagcagctgcagcttcaatgattatat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
5316620 |
aattagactttcatgccgtatttattcgttgcaaaatcatatattgaaccataaaaatgagaagctgcagcttcaatgattatat |
5316536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 23 - 385
Target Start/End: Complemental strand, 5310250 - 5309888
Alignment:
| Q |
23 |
gaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctg |
122 |
Q |
| |
|
|||||||||||| | |||||||||| || |||||||||||||||||| ||||| |||||||||| ||||||||| || ||||| || |||||||||| |
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|
| T |
5310250 |
gaagaataaggaaataacataccataagataggaccatgaccatgtcactgtctatgacagttggaactctgtgagccacagttatgactgtgcattctg |
5310151 |
T |
|
| Q |
123 |
caaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtag |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||| |
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|
| T |
5310150 |
caaattcttgtctaattactctttgtagtattgcatctgtggaagagtcaatagaggcagtagcttcatccagaacaagaattttgtttctcttaagtag |
5310051 |
T |
|
| Q |
223 |
aactcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatcgctcactgcaaaacttatcagaattagactttcatgccgtatt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | |||| |
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|
| T |
5310050 |
aactcttccaagacaaaacaattgcctttgtctcaagctccaatttccaccttcatcactcactgcaaaacttatcagaattagaatttcataacatatt |
5309951 |
T |
|
| Q |
323 |
tattcgttgcaaaatcatatattgaaccataaaaatgagcagctgcagcttcaatgattatat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||| |
|
|
| T |
5309950 |
tattcgttgcaaaatcatatattgaaccatagaaatgagaagttgtagcttcaatgattatat |
5309888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 40 - 385
Target Start/End: Original strand, 5286941 - 5287292
Alignment:
| Q |
40 |
cataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctgcaaattcttgtctaatt |
139 |
Q |
| |
|
|||||||||| || |||||||||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||| |||||||||||||||| |
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|
| T |
5286941 |
cataccataagataggaccatgaccatgtcactgtctattacagttggaactctgtgagccacagttataactgtgcattctgaaaattcttgtctaatt |
5287040 |
T |
|
| Q |
140 |
actctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtagaactcttccaagacaaa |
239 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||| |
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|
| T |
5287041 |
actctttgtagaattgcatccgtcgcagagtcaatggatgctgttgcttcatccagaacaagaattctgtttctcttaagtagaactcttccaaggcaaa |
5287140 |
T |
|
| Q |
240 |
acaattgcctttgtcccaagctccaatttccaccttcatcgctcactgcaaaacttatcagaatt-agactttcatgccgtatttattcgttgcaaaatc |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| | ||||||||||| |
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|
| T |
5287141 |
acaattgcctttgtcccaagctccaatttccaccttcatcgctcactgcaaaacttatcagagttaagactttcatgccttatttaatggttgcaaaatc |
5287240 |
T |
|
| Q |
339 |
atatattgaac-----cataaaaatgagcagctgcagcttcaatgattatat |
385 |
Q |
| |
|
|||| |||||| ||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
5287241 |
atatgttgaacaatagaatagaaatgaatagctgtagcttcaatgattatat |
5287292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 5279175 - 5279560
Alignment:
| Q |
1 |
aaaatggaaaataaaaaagaatgaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
5279175 |
aaaatggaaaataaaaatgaatgaagaataaggattaagcataccataagataagaccagaaccatgtcactgtctattacagttggaactctgtgagcc |
5279274 |
T |
|
| Q |
101 |
acggttataaccgtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaacta |
200 |
Q |
| |
|
|| |||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || || |||||||| ||||| | |
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|
| T |
5279275 |
acagttataactgtgcattcttcgaattcttgtctaattactctttgtagaattgcatctgtggctgagtcaatggatgctgttgcttcatctagaacaa |
5279374 |
T |
|
| Q |
201 |
gaatcctgttcctcttaagtagaactcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatcgctcactgcaaaactt-atca |
299 |
Q |
| |
|
|||| || || || |||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||| || | |
|
|
| T |
5279375 |
gaattctatttcttttaagtagaactcttccaaggcaaaacagttgccgctgtcctaagctccaatttccaccttcatcactcactgcaaaacttaataa |
5279474 |
T |
|
| Q |
300 |
gaattagactttcatgccgtatttattcgttgcaaaatcatatattgaaccataaaaatgagcagctgcagcttcaatgattatat |
385 |
Q |
| |
|
||||||| |||| || | || |||| ||||||||||||||||| |||| ||| ||||||| || || || |||||||||||||| |
|
|
| T |
5279475 |
gaattaggctttgattgctaatatattggttgcaaaatcatatatagaacaatagaaatgagaaggtgtagattcaatgattatat |
5279560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 27 - 378
Target Start/End: Original strand, 14946202 - 14946553
Alignment:
| Q |
27 |
aataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctgcaaa |
126 |
Q |
| |
|
|||||||| | | |||||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
14946202 |
aataaggaattaacataccataagataggaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattcttcaaa |
14946301 |
T |
|
| Q |
127 |
ttcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtagaact |
226 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| || |||||||| ||||||||||| |||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
14946302 |
ctcttgtctgattattctttgtagaatggcatctgtggctgaatcaatggatgcagtagcttcgtccaaaacaagaattttgttcctcttaagtagaact |
14946401 |
T |
|
| Q |
227 |
cttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatcgctcactgcaaaacttatcagaattagactttcatgccgtatttatt |
326 |
Q |
| |
|
||||| || ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
14946402 |
cttccgaggcaaaacaattggcgttgtcccaagctccaatttccaccttcatcactcactgcaaaacttatcagaattagactttcataccttatttatt |
14946501 |
T |
|
| Q |
327 |
cgttgcaaaatcatatattgaaccataaaaatgagcagctgcagcttcaatg |
378 |
Q |
| |
|
|||| ||||| ||||| ||||| ||| ||| ||| || | |||||||||| |
|
|
| T |
14946502 |
ggttgtaaaataatatagtgaacaatagaaaggagaaggcgtagcttcaatg |
14946553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 23 - 349
Target Start/End: Complemental strand, 15128882 - 15128556
Alignment:
| Q |
23 |
gaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctg |
122 |
Q |
| |
|
|||||||||||| | | |||||||||| || ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
15128882 |
gaagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattctt |
15128783 |
T |
|
| Q |
123 |
caaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtag |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||| || |||||||| |||||||||||||||| ||| ||||| |||||||| |||||||| |
|
|
| T |
15128782 |
caaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatccaaaacaagaattctgttccttttaagtag |
15128683 |
T |
|
| Q |
223 |
aactcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatcgctcactgcaaaacttatcagaattagactttcatgccgtatt |
322 |
Q |
| |
|
||||||||| || ||||| ||||| | |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| | | ||| |
|
|
| T |
15128682 |
aactcttccgaggcaaaataattggcgttgtcccaagctccaatttccaccttcatcactcactgcataacttattagaattagactttcttagcttata |
15128583 |
T |
|
| Q |
323 |
tattcgttgcaaaatcatatattgaac |
349 |
Q |
| |
|
|||| ||||||||||| ||||||||| |
|
|
| T |
15128582 |
tattgcttgcaaaatcacatattgaac |
15128556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 56 - 287
Target Start/End: Original strand, 5347915 - 5348146
Alignment:
| Q |
56 |
accatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctgcaaattcttgtctaattactctttgtagaatgg |
155 |
Q |
| |
|
||||||||||| ||||| || || |||||||||| ||| ||||| || |||||||| |||||||||||||||||||||||||||| | |||||||||| | |
|
|
| T |
5347915 |
accatgaccatatcactgtcaataacagttggaactctatgagctacagttataactgtgcattctgcaaattcttgtctaattattttttgtagaatag |
5348014 |
T |
|
| Q |
156 |
catctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtagaactcttccaagacaaaacaattgcctttgtcc |
255 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| ||||||||| | || || ||||| || ||||||||||| ||||||||||| ||||| || |
|
|
| T |
5348015 |
catctgtggcagaatcaatagaggcagtagcttcatccaaaactagaattttatttcttttaagaaggactcttccaaggcaaaacaattgtctttggcc |
5348114 |
T |
|
| Q |
256 |
caagctccaatttccaccttcatcgctcactg |
287 |
Q |
| |
|
|| |||||||||| | ||||||| ||||||| |
|
|
| T |
5348115 |
catgctccaattttccccttcattactcactg |
5348146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 24 - 291
Target Start/End: Original strand, 31523367 - 31523634
Alignment:
| Q |
24 |
aagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattctgtgagcaacggttataaccgtgcattctgc |
123 |
Q |
| |
|
||||||||||| | | |||||||||| || || ||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||||||| |
|
|
| T |
31523367 |
aagaataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaattctgtgagcaatggttattacagtgcattctgc |
31523466 |
T |
|
| Q |
124 |
aaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatccagaactagaatcctgttcctcttaagtaga |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||| ||||| |
|
|
| T |
31523467 |
aaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttcatctagaactaaaattttgttcctcttgagtagt |
31523566 |
T |
|
| Q |
224 |
actcttccaagacaaaacaattgcctttgtcccaagctccaatttccaccttcatcgctcactgcaaa |
291 |
Q |
| |
|
||||||||||||||||||| ||| | || || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31523567 |
actcttccaagacaaaacagttggcgctgccctaagctccaatttccaccttcatcactcactgcaaa |
31523634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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