View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_17 (Length: 392)
Name: NF14915_low_17
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 38 - 374
Target Start/End: Complemental strand, 29777019 - 29776660
Alignment:
| Q |
38 |
tcaatttcatgcgttgtcaaagaaattgaatgcattcaagatttttctaatattcggagaatgtaaatttcaattttcatggtcaatggtcaaatacaca |
137 |
Q |
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| T |
29777019 |
tcaatttcatgagttgtcaaagaaattgaatgcattcaagatttttctaatattcggagaatgtaaatttcaattt-catggtcaatggtcaaatacaca |
29776921 |
T |
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| Q |
138 |
attaa-----------taaatacagatatgagataactcaccaataaccaattctcaaccgttagagaaggactgactatatattttgaaaactcctaca |
226 |
Q |
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| T |
29776920 |
attaaggcataattaataaatacagatatgagataactcaccaataaccaattctcaaccgttagagaaggactgacaatatattttgaaaactcctaca |
29776821 |
T |
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| Q |
227 |
tgcatttagctccattct-------------tctcacttgcttgacaatgtccaaaacaattcaatattttgatctcaacaccggagccaaaatcccttc |
313 |
Q |
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| T |
29776820 |
tgcatttagctccattctaacttctcattcttctcacttgcttgacaatgtccaaggcaattcaattctttgatctcaacaccggagccaagatcccttc |
29776721 |
T |
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| Q |
314 |
cgttggcttgggaacttggcaagccgaggacgatcctggcctcgttgctgaagccgtcgct |
374 |
Q |
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| T |
29776720 |
cgttggcttgggaacttggcaagccgaggacgatcctggcctcgttgctgaagccgtcgct |
29776660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 29787095 - 29787048
Alignment:
| Q |
287 |
tctcaacaccggagccaaaatcccttccgttggcttgggaacttggca |
334 |
Q |
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| T |
29787095 |
tctcaacaccggagccaagatcccttccgtcggcttgggtacttggca |
29787048 |
T |
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