View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_20 (Length: 372)
Name: NF14915_low_20
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 35225185 - 35224839
Alignment:
| Q |
11 |
gcataggtactttacttactcactcacacagtcttatataccttctttagttttgtttctaccaaatgttacagaacttataaacatattttggtccttg |
110 |
Q |
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| T |
35225185 |
gcataggtacttcactcactcactcacacagtcttatataccttctttagttttgtttctaccaaatgttacagaacttataagcatattttggtccttg |
35225086 |
T |
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| Q |
111 |
aattgtagcattgtatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatattaatcagatttgtccc-nnnnnnngat |
209 |
Q |
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| T |
35225085 |
aattgtagcattgtatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatattaatcagatttgtccctttgtcttgat |
35224986 |
T |
|
| Q |
210 |
atgttatcaaa--cattccaattgaagaacgaacttgattagcatcttaaaattccagaaagacattgaaatgatgtcaaagttatctattaagcttgcg |
307 |
Q |
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| T |
35224985 |
atgttatcaaatgcattccaattgaagatcgaacttgattagcatcttaaaactccagaaagacattgaaatgacgtcaaagttatctattaagcttgcg |
35224886 |
T |
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| Q |
308 |
tgccatagatagggcttcattgtctttatctataaagcaccaatcat |
354 |
Q |
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| T |
35224885 |
tgccatagatagggcttcattgtctttatctataaagcaccaatcat |
35224839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 9650894 - 9650831
Alignment:
| Q |
121 |
ttgtatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatatt |
184 |
Q |
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| T |
9650894 |
ttgtatcaacctagccccccacattatcaataatccaaaatcgtctatggaattgcaaaatatt |
9650831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 24917727 - 24917786
Alignment:
| Q |
124 |
tatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatat |
183 |
Q |
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| T |
24917727 |
tatcaacctagtcctccctattatcaatattccaaaatgatccctggaattgcaaaatat |
24917786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 24993637 - 24993696
Alignment:
| Q |
124 |
tatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatat |
183 |
Q |
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| T |
24993637 |
tatcaacctagtcctccctattatcaatattccaaaatgatccctggaattgcaaaatat |
24993696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 26270983 - 26270906
Alignment:
| Q |
111 |
aattgtagcattgtatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatattaatc |
188 |
Q |
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| T |
26270983 |
aattgtatgattgtatcaatctaatctctcacattatcaatattccaaaatgatcattggaattgcaaaatattaatc |
26270906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 55570873 - 55570960
Alignment:
| Q |
111 |
aattgtagcattgtatcaacctagtcctacacattataaatattccaaaatggtctctggaattgcaagatattaatcagatttgtccc |
199 |
Q |
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|||||||| || |||||||||||||||| |||||||| |||||| ||||||| | | ||||||||| || |||||||| ||||||| |
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| T |
55570873 |
aattgtaggatggtatcaacctagtcct-cacattattaatatttcaaaatgatttagtgaattgcaaaatgttaatcaggcttgtccc |
55570960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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