View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_22 (Length: 367)
Name: NF14915_low_22
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 10442387 - 10442039
Alignment:
| Q |
18 |
aactggggccaccgaagaacttagcaccccagaatattgtgactgnnnnnnnnn---------tgtgtgattcaaagatttaaaacaaacattaaattca |
108 |
Q |
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| T |
10442387 |
aactggggccaccgaagaacttagcaccccagaatattgtgactgaaaaaaaaaaaaataaagtgtgtgattcaaagatttaaaacaaacattaaattca |
10442288 |
T |
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| Q |
109 |
ttaataagtagataatttgaatatgtatataacctgcataatagcttgatcactgcttatctgctcttctgccctgccagatgtagagggggacttgatc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
10442287 |
ttaataagtagataatttgaatatgtatataacctgcataatagcttgatcactgcttatctgctcttctgcccagccagatgtggagggggacttgatc |
10442188 |
T |
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| Q |
209 |
tgcaaatcctgaaatgataaaaacttataagggcatggacatgcacagcttagataagcatatttgttctgcatacagctcaagttcttgtcaccaaatg |
308 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10442187 |
tgcaaatcctgaaataataaaaacttataagagcatggacatgcacagcttagataagcatatttgttctgcatacagctcaagttcttgtcaccaaatg |
10442088 |
T |
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| Q |
309 |
gctgtttcactgccactaatggtgatcaacatatacatatacacctatg |
357 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
10442087 |
gctgtttcactggcactaatggtgctcaacatatacatatacacctatg |
10442039 |
T |
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