View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_23 (Length: 362)
Name: NF14915_low_23
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_23 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 34316986 - 34316638
Alignment:
| Q |
14 |
atatacctgcaaatgactagcaacattttctctagtcagccatggaacattcatcaaatctagaattttcttgggaccaacttctgccaaaaagaaatta |
113 |
Q |
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| T |
34316986 |
atatacctgcaaatgactagcaacattttctctagtcagccatggaacattcatcaaatctagaattttcttgggaccaacttctgccaaaaagaaatta |
34316887 |
T |
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| Q |
114 |
tttttgtcattacattctcttacacaaaaaatatgatggttcataacttcatacataaaattatcaagaacaatatgataaacaagaccggaatttaagt |
213 |
Q |
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| T |
34316886 |
tttttgtcattacattctcttacacaaaaaatatgatggttcataacttcatacataaaattatcaagaacaatatgataaacaagaccggaatttaagt |
34316787 |
T |
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| Q |
214 |
tccgttcattggcgtgcatagcaataagcagatttatttgaatctgacttcgtagagaatgttgataagaaacttactatcgaatccaagctgattcacc |
313 |
Q |
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| T |
34316786 |
tccgttcattggcgtgcatagcaataagcagatttatttgaatctgacttcgtagagaatgttgataagaaacttactatcgaatccaagctgattcacc |
34316687 |
T |
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| Q |
314 |
gctttaacaaatttctgatgaagatccacagaccaaactactctagctt |
362 |
Q |
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| T |
34316686 |
gctttaacaaatttctgatgaagatccacagaccaaactactctagctt |
34316638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 34322050 - 34322009
Alignment:
| Q |
260 |
acttcgtagagaatgttgataagaaacttactatcgaatcca |
301 |
Q |
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| T |
34322050 |
acttcatagagaatgttgataagaaacttactaccaaatcca |
34322009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 38952360 - 38952439
Alignment:
| Q |
30 |
ctagcaacattttctctagtcagccatggaacattcatcaaatctagaattttcttgggaccaacttctgccaaaaagaa |
109 |
Q |
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| T |
38952360 |
ctagcaacattctctctactcagccatggaacattcatcaaatctagtattttcttgggaccaacttctgccaaacagaa |
38952439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 38952809 - 38952891
Alignment:
| Q |
280 |
aagaaacttactatcgaatccaagctgattcaccgctttaacaaatttctgatgaagatccacagaccaaactactctagctt |
362 |
Q |
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| T |
38952809 |
aagaaacttactatcaaatccaatctgattcactgctttaacaaacttctgatgaagatctacagaccaaactactctagctt |
38952891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 50108008 - 50107935
Alignment:
| Q |
16 |
atacctgcaaatgactagcaacattttctctagtcagccatggaacattcatcaaatctagaattttcttggga |
89 |
Q |
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|||||||||| || || ||||||||||||||||| |||| |||||||||||||| || |||||||| |||||| |
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| T |
50108008 |
atacctgcaagtggctggcaacattttctctagtgagcccaggaacattcatcaattccagaatttttttggga |
50107935 |
T |
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