View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14915_low_24 (Length: 327)

Name: NF14915_low_24
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14915_low_24
NF14915_low_24
[»] scaffold0038 (2 HSPs)
scaffold0038 (159-326)||(115488-115651)
scaffold0038 (1-97)||(115330-115426)
[»] chr6 (2 HSPs)
chr6 (159-326)||(28324173-28324336)
chr6 (1-97)||(28324015-28324111)
[»] chr8 (2 HSPs)
chr8 (159-327)||(43592254-43592422)
chr8 (11-97)||(43592484-43592570)
[»] chr1 (2 HSPs)
chr1 (224-327)||(52335590-52335690)
chr1 (11-97)||(52335740-52335826)
[»] chr5 (2 HSPs)
chr5 (1-97)||(43448009-43448105)
chr5 (159-204)||(43448167-43448212)
[»] chr3 (1 HSPs)
chr3 (159-283)||(47863313-47863436)


Alignment Details
Target: scaffold0038 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 159 - 326
Target Start/End: Original strand, 115488 - 115651
Alignment:
Q  159 ctttaaagtcattttcaccaatatttgactacgcgtttttctaatatttttctacatgnnnnnnngtcagtcattttcactaataattagattcattcta 258  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  115488 ctttagagtcattttcaccaatatttgactacgcgtttttctaatatttttctacatgtttttt-gtcagtcattttcactaataattagattcattcta 115586  T
Q  259 attaatatttcactaatattctctccttaattttttgttgtacactattcttctacatgtttatttgt 326  Q
    ||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  115587 attaaaatttcactaatattctctc---aattttttgttgtacactattcttctacatgtttatttgt 115651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 115330 - 115426
Alignment:
Q  1 ttaagttaacttttttgtagtaattagattttaatgaaaatgaatatgcattaaaatcacatcatgtgacaatttcaagtcaacacaattccctctc 97  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  115330 ttaagtcaacttttttgtagtaattaaattttaatgaaaatgaatatgcattaaaatcacatcatgtgacaatttcaagtcaacacaattctctctc 115426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 159 - 326
Target Start/End: Original strand, 28324173 - 28324336
Alignment:
Q  159 ctttaaagtcattttcaccaatatttgactacgcgtttttctaatatttttctacatgnnnnnnngtcagtcattttcactaataattagattcattcta 258  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  28324173 ctttagagtcattttcaccaatatttgactacgcgtttttctaatatttttctacatgtttttt-gtcagtcattttcactaataattagattcattcta 28324271  T
Q  259 attaatatttcactaatattctctccttaattttttgttgtacactattcttctacatgtttatttgt 326  Q
    ||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  28324272 attaaaatttcactaatattctctc---aattttttgttgtacactattcttctacatgtttatttgt 28324336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 28324015 - 28324111
Alignment:
Q  1 ttaagttaacttttttgtagtaattagattttaatgaaaatgaatatgcattaaaatcacatcatgtgacaatttcaagtcaacacaattccctctc 97  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28324015 ttaagtcaacttttttgtagtaattaaattttaatgaaaatgaatatgcattaaaatcacatcatgtgacaatttcaagtcaacacaattctctctc 28324111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 159 - 327
Target Start/End: Complemental strand, 43592422 - 43592254
Alignment:
Q  159 ctttaaagtcattttcaccaatatttgactacgcgtttttctaatatttttctacatgnnnnnnngtcagtcattttcactaataattagattcattcta 258  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||||||| | ||||||||||||||||    
T  43592422 ctttagagtcattttcaccaatatttgactacgcgtttttctaatatttttctacatgtttttt-gtctgtcattttcactgacaattagattcattcta 43592324  T
Q  259 attaatatttcactaatattctctccttaatt-ttttgttgtacactattcttctacatgtttatttgta 327  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  43592323 attaatatttcactaacattctctccttaatttttttgttgtacactattcttctatatgtttatttgta 43592254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 43592570 - 43592484
Alignment:
Q  11 ttttttgtagtaattagattttaatgaaaatgaatatgcattaaaatcacatcatgtgacaatttcaagtcaacacaattccctctc 97  Q
    |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| |||||||||||| |||||    
T  43592570 ttttttgtagtaattagattttaatgaaaacgaatatgcattagaaacacatcatgtgacaatttcaaatcaacacaattctctctc 43592484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 52335690 - 52335590
Alignment:
Q  224 gtcagtcattttcactaataattagattcattctaattaatatttcactaatattctctccttaattttttgttgtacactattcttctacatgtttatt 323  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  52335690 gtcactcattttcactaataattagattcattctaattaatatttcactaatattct---cttaattttttgttgtacactattcttctacatgtttatt 52335594  T
Q  324 tgta 327  Q
    ||||    
T  52335593 tgta 52335590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 52335826 - 52335740
Alignment:
Q  11 ttttttgtagtaattagattttaatgaaaatgaatatgcattaaaatcacatcatgtgacaatttcaagtcaacacaattccctctc 97  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||    
T  52335826 ttttttgtagtaattagattttaatgaaaaggaatatgcattaaaatcacatcatgtggcaatttcaaatcaacacaattctctctc 52335740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 43448009 - 43448105
Alignment:
Q  1 ttaagttaacttttttgtagtaattagattttaatgaaaatgaatatgcattaaaatcacatcatgtgacaatttcaagtcaacacaattccctctc 97  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43448009 ttaagtcaacttttttgtagtaattagattttaatgaaaatgaatatacattaaaatcacatcatgtgacaatttcaagtcaacacaattctctctc 43448105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 43448167 - 43448212
Alignment:
Q  159 ctttaaagtcattttcaccaatatttgactacgcgtttttctaata 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43448167 ctttaaagtcattttcaccaatatttgactacgcgtttttctaata 43448212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 47863313 - 47863436
Alignment:
Q  159 ctttaaagtcattttcaccaatatttgactacgcgtttttctaatatttttctacatgnnnnnnngtcagtcattttcactaataattagattcattcta 258  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||        |||||||||||||||||||||||||||||||||||    
T  47863313 ctttagagtcattttcaccaatatttgcctacgcgtttttctaataattttctacat-attttttgtcagtcattttcactaataattagattcattcta 47863411  T
Q  259 attaatatttcactaatattctctc 283  Q
    |||||||||||||||||||||||||    
T  47863412 attaatatttcactaatattctctc 47863436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University