View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_25 (Length: 325)
Name: NF14915_low_25
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43446721 - 43446493
Alignment:
| Q |
1 |
cttatcacttatttatcgttatcaatgatttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattat |
100 |
Q |
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| T |
43446721 |
cttatcacttattaatcgttatcaatgatttttcatttatttgttaggacttattagggttaaataaactaggttgctatgttatgcatgtatgcattat |
43446622 |
T |
|
| Q |
101 |
gtagagttgatctacattgtttgaatttgatggtgtagattctcctctccaaaacaaaatattttcaataagaggcatgaatcaaacttaccattgaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43446621 |
gtagagttgatctacattgtttgaatttgatggtgtagattctcctctccaaaacaaaatattttcaataagacacatgaatcaaacttaccattgaacc |
43446522 |
T |
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| Q |
201 |
aatttattattgggataattgattgtttg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43446521 |
aatttattattgggataattgattgtttg |
43446493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 46571354 - 46571553
Alignment:
| Q |
30 |
ttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttg |
129 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |
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| T |
46571354 |
ttttcatttatttgttaggacttattagggttaaattaactaggttgctatgttatgcatgtatgtattacgtagagttgttctacattgtttgaatttg |
46571453 |
T |
|
| Q |
130 |
atggtgtagattctcctctccaaaacaaaatattttcaataagaggcatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg |
229 |
Q |
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| T |
46571454 |
atggtgtagattctcctctccaaaacaaaatattttcaataagagacataaatcaaacttaccattgaaccaatttattattgggataattgattgtttg |
46571553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 9182305 - 9182486
Alignment:
| Q |
24 |
aatgatttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttg |
123 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| |
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| T |
9182305 |
aatgatttttcatttatttgttaggacttattaggattaaattaactaggttgctatgttatgaatgtatgtattatgtagagtttatctacattgtttg |
9182404 |
T |
|
| Q |
124 |
aatttgatggtgtagattctcctctccaaaacaaaatattttcaataagaggcatgaatcaaacttaccattgaaccaattt |
205 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
9182405 |
aatttgatggtgtagattctcctctcaaaaataaaatattttcaataagagacatgaatcaaacttaccattaaaccaattt |
9182486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 43593440 - 43593645
Alignment:
| Q |
24 |
aatgatttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttg |
123 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |
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| T |
43593440 |
aatgatttttcatttatttgttaggacttattagggttaaattaactaggttgctatgttatacatgtatgtattatgtagagttgatctacatagtttg |
43593539 |
T |
|
| Q |
124 |
aatttgatggtgtagattctcctctccaaaacaaaatattttcaataagaggcatgaatcaaacttaccattgaaccaatttattattgggataattgat |
223 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43593540 |
aatttaatggtgtagattctcctctccaaaacaaaatattttccgtaagagacatgaatcaaacttaccattgaaccaatttattattgggataattgat |
43593639 |
T |
|
| Q |
224 |
tgtttg |
229 |
Q |
| |
|
| |||| |
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| T |
43593640 |
tttttg |
43593645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 61 - 205
Target Start/End: Complemental strand, 28364866 - 28364722
Alignment:
| Q |
61 |
taaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttgaatttgatggtgtagattctcctctccaaaacaaaat |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
28364866 |
taaattaactaggttgctatgttatgcatgtatgtattatgtagagttgatctacattgtttgaatttgatgatgtagattctcctctccaaaacataat |
28364767 |
T |
|
| Q |
161 |
attttcaataagaggcatgaatcaaacttaccattgaaccaattt |
205 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28364766 |
attttcaataagagacatgaatcaaacttaccattgaaccaattt |
28364722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 28364702 - 28364663
Alignment:
| Q |
190 |
accattgaaccaatttattattgggataattgattgtttg |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
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| T |
28364702 |
accattgaactaatttattattgggataattgattgtttg |
28364663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 47861666 - 47861551
Alignment:
| Q |
24 |
aatgatttttcatttatttgttaggatttattagggttaaattaactaggttgctatgttatgcatgtatgcattatgtagagttgatctacattgtttg |
123 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||| |
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| T |
47861666 |
aatgatttttcatttatttgttaggacttattagggttaaattaactaggttgctacgttacgcatgtatgtattatgtaaagttgatctacattgtttg |
47861567 |
T |
|
| Q |
124 |
aatttgatggtgtaga |
139 |
Q |
| |
|
|||||||||||||||| |
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| T |
47861566 |
aatttgatggtgtaga |
47861551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 47861553 - 47861495
Alignment:
| Q |
171 |
agaggcatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg |
229 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47861553 |
agagacatgaatcaaacttaccattgaaccaatttattattgggataattgattgtttg |
47861495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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