View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_34 (Length: 266)
Name: NF14915_low_34
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 38169954 - 38170201
Alignment:
| Q |
1 |
gttgttgtaattttttatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagc |
100 |
Q |
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| T |
38169954 |
gttgttgtaattttttatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagc |
38170053 |
T |
|
| Q |
101 |
aagagtaccaaatgaaacataaacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttgagtcaacacggacaacgtcaccacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38170054 |
aagagtaccaaatgaaacataaacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttgagtcaacacggacaacgtcaccacca |
38170153 |
T |
|
| Q |
201 |
aacgaattatccgtaggatccttgccatccaagaaagcagatggaatc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38170154 |
aacgaattatccgtaggatccttgccatccaagaaagcagatggaatc |
38170201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 38184447 - 38184684
Alignment:
| Q |
11 |
ttttttatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtacca |
110 |
Q |
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| T |
38184447 |
tttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtacca |
38184546 |
T |
|
| Q |
111 |
aatgaaacataaacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttgagtcaacacggacaacgtcaccaccaaacgaattat |
210 |
Q |
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| T |
38184547 |
aatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaacatcgacaacaccaccaccagacgaagtat |
38184646 |
T |
|
| Q |
211 |
ccgtaggatccttgccatccaagaaagcagatggaatc |
248 |
Q |
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| T |
38184647 |
cattaggatctttaccgcccaagaaagcatatggaatc |
38184684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 38179778 - 38180015
Alignment:
| Q |
11 |
ttttttatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtacca |
110 |
Q |
| |
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||||| ||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| ||||||||||||| |
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| T |
38179778 |
tttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctattggacaaaatagcaagagtacca |
38179877 |
T |
|
| Q |
111 |
aatgaaacataaacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttgagtcaacacggacaacgtcaccaccaaacgaattat |
210 |
Q |
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| T |
38179878 |
aatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaacaccgacaacaccaccactagacgaagtat |
38179977 |
T |
|
| Q |
211 |
ccgtaggatccttgccatccaagaaagcagatggaatc |
248 |
Q |
| |
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| T |
38179978 |
cattaggatctttaccgcccaagaaagtatatggaatc |
38180015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 35053994 - 35053885
Alignment:
| Q |
21 |
ctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacat |
120 |
Q |
| |
|
|||| |||||||||||| | ||||||| |||||||||| ||| |||||||||||||| ||||||| | |||||||||| | ||||||||||||||| |
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| T |
35053994 |
ctaagaacccacaagaatggaaatccacaatccaacaaagcatgtgcaatttcctccctttgtctctcagacaaaacaaagtaactaccaaatgaaacat |
35053895 |
T |
|
| Q |
121 |
aaacaacaga |
130 |
Q |
| |
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|||| ||||| |
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| T |
35053894 |
aaaccacaga |
35053885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 35060750 - 35060641
Alignment:
| Q |
18 |
tctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaa |
117 |
Q |
| |
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||||| || ||||||||||| ||||| ||| ||| |||||| |||| |||||||||||| |||||| | |||||||||| | ||||||| |||| |
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| T |
35060750 |
tctctcatgacccacaagaatgaaaacccacaattcaacaacgcacttgcaatttcctctgtttgtcgctcagacaaaacaaagtaactaccaaaagaaa |
35060651 |
T |
|
| Q |
118 |
cataaacaac |
127 |
Q |
| |
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|||||||||| |
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|
| T |
35060650 |
cataaacaac |
35060641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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