View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14915_low_35 (Length: 261)
Name: NF14915_low_35
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_35 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 330838 - 330597
Alignment:
| Q |
20 |
accgggatatccaccaccaggttatccaccgcaacaaggatatcctccaccaccctacccagcacaagggtatcctccacaatatgctcctcctcaatac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330838 |
accgggatatccaccaccaggttatccaccgcaacaaggatatcctccaccaccctacccagcacaagggtatcctccacaatatgctcctcctcaatac |
330739 |
T |
|
| Q |
120 |
gctcaacctccacctcctcaacatgtacacaatcacaacaattcaagcggccctggttgtttagaaggatggtacgtacgttaattacataattccctct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
330738 |
gctcaacctccacctcctcaacatgtacacaatcacaacaattcaagcggccctggttgtttagaaggatggtacgttcgttaattatataattccctct |
330639 |
T |
|
| Q |
220 |
ctcatgcatgcatccatgcattcctttcattcttaatctctt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330638 |
ctcatgcatgcatccatgcattcctttcattcttaatctctt |
330597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University