View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14915_low_37 (Length: 256)

Name: NF14915_low_37
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14915_low_37
NF14915_low_37
[»] chr1 (2 HSPs)
chr1 (20-252)||(17583478-17583711)
chr1 (20-252)||(17591385-17591619)
[»] chr5 (13 HSPs)
chr5 (20-179)||(32762978-32763136)
chr5 (20-142)||(28474838-28474960)
chr5 (22-142)||(32858229-32858352)
chr5 (24-115)||(32740072-32740163)
chr5 (41-113)||(32651840-32651912)
chr5 (39-115)||(32656093-32656169)
chr5 (75-138)||(32710231-32710294)
chr5 (24-113)||(32767882-32767971)
chr5 (85-172)||(25477501-25477588)
chr5 (44-112)||(25469577-25469645)
chr5 (192-246)||(28475016-28475072)
chr5 (196-246)||(32557754-32557806)
chr5 (42-86)||(32662009-32662053)
[»] chr7 (3 HSPs)
chr7 (20-157)||(7969877-7970014)
chr7 (37-142)||(37577114-37577219)
chr7 (192-251)||(37577263-37577324)
[»] chr4 (1 HSPs)
chr4 (44-142)||(21524552-21524653)
[»] chr2 (3 HSPs)
chr2 (37-120)||(16756981-16757064)
chr2 (24-115)||(16752463-16752554)
chr2 (191-246)||(16752637-16752694)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 17583478 - 17583711
Alignment:
Q  20 gaacgtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcataaccccc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  17583478 gaacgtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacctctcaagctagatatttgcataaccccc 17583577  T
Q  120 agggtacctcctatttccttttcaatgctttggtttttccccccagttaaagttttgtta-nnnnnnnnnatattttgaatttatactctagcattttat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  17583578 agggtacctcctatttccttttcaatgctttggtttttccccccagttaaagttttgttattttttttttatattttgaatttatactctagcattttat 17583677  T
Q  219 cttattcttcagtttttcaaatgccaaacaaagg 252  Q
    ||||||||||||||||||||||||||||| ||||    
T  17583678 cttattcttcagtttttcaaatgccaaacgaagg 17583711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 17591385 - 17591619
Alignment:
Q  20 gaacgtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcataaccccc 119  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |    
T  17591385 gaacgtccaacaagttactttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacctctcaagctagatatttgcataacccgc 17591484  T
Q  120 agggtacctcctatttccttttcaatgctttggtttttccccccagttaaagttttgttannnnnnnnnatattttgaatt--tatactctagcatttta 217  Q
    | |||||||||||| ||||||||  ||||||||||||| || ||| ||||||| || |||         || | |||||||  |||||||||||||||||    
T  17591485 acggtacctcctatctccttttctttgctttggttttttcctccaattaaagtcttattattttcttttatgtattgaatttatatactctagcatttta 17591584  T
Q  218 tcttattcttcagtttttcaaatgccaaacaaagg 252  Q
    |||||||||||||||||||||||||||||||||||    
T  17591585 tcttattcttcagtttttcaaatgccaaacaaagg 17591619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 32762978 - 32763136
Alignment:
Q  20 gaacgtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcataaccccc 119  Q
    |||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||| |||||| |||| | ||||||||||||||||||||||||||    
T  32762978 gaacgtccaacgtgttgctttagcaactctttcatcagagtttcttgtgattccatttgcttcttccgaacctctcaagctagatatttgcataaccccc 32763077  T
Q  120 agggtacctcctatttccttttcaatgctttggtttttccccccagttaaagttttgtta 179  Q
    | |||||||||||| ||||||||  |||||| ||||||  ||||| ||||||| ||||||    
T  32763078 atggtacctcctatctccttttctttgcttttgttttt-tccccaattaaagtcttgtta 32763136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 28474838 - 28474960
Alignment:
Q  20 gaacgtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcataaccccc 119  Q
    |||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| |||||||||    
T  28474838 gaacgtccaagaggttgctttagcaactccttcatcagagttgcttgtgattccatttggttcttccgaacctctcaagctagatatttgtataaccccc 28474937  T
Q  120 agggtacctcctatttccttttc 142  Q
    | |||||||||||| ||||||||    
T  28474938 atggtacctcctatctccttttc 28474960  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 32858229 - 32858352
Alignment:
Q  22 acgtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctga---acttgtcaagctagatatttgcataacccc 118  Q
    ||||||||| | || ||||||||||||||||||||||||  |||||||||||||||||||||| |||   || |   |||||||||||||||||| ||||    
T  32858229 acgtccaacggtttactttagcaactctttcatcagagtgccttgtgattccatttggttcttttgaaccacctcataagctagatatttgcatagcccc 32858328  T
Q  119 cagggtacctcctatttccttttc 142  Q
    || |||||||||||| ||||||||    
T  32858329 catggtacctcctatctccttttc 32858352  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 32740072 - 32740163
Alignment:
Q  24 gtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcataac 115  Q
    ||||||||| || ||||||||| |||||||||| |||| ||||||||||||||| |||||||||||| | ||||| |||| |||||||||||    
T  32740072 gtccaacagattactttagcaaatctttcatcaaagttccttgtgattccatttagttcttctgaacctctcaagttagaaatttgcataac 32740163  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 32651912 - 32651840
Alignment:
Q  41 agcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcata 113  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||| | | |||||||| |||||||||    
T  32651912 agcaaatctttcatcagagttccttgtgattccatttggttcttctgaacctctgaagctagaaatttgcata 32651840  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 32656169 - 32656093
Alignment:
Q  39 ttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcataac 115  Q
    |||||||||||||| || |||||||||||||||||||||||||||| ||||  | |||||||||| |||||||||||    
T  32656169 ttagcaactctttcgtcggagttgcttgtgattccatttggttcttttgaagctctcaagctagaaatttgcataac 32656093  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 32710231 - 32710294
Alignment:
Q  75 tttggttcttctgaacttgtcaagctagatatttgcataacccccagggtacctcctatttcct 138  Q
    |||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||| ||||    
T  32710231 tttggttcttctgaacttctcgagctagaaatttgcataacccccaaggtacctcctatctcct 32710294  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 32767882 - 32767971
Alignment:
Q  24 gtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcata 113  Q
    ||||| ||| || |||||||||||||| |||||||| | |||||||||||| |||| ||||||||||   |||||||||| |||||||||    
T  32767882 gtccagcagtttactttagcaactcttccatcagagctccttgtgattccagttggctcttctgaaccactcaagctagaaatttgcata 32767971  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 25477501 - 25477588
Alignment:
Q  85 ctgaacttgtcaagctagatatttgcataacccccagggtacctcctatttccttttcaatgctttggtttttccccccagttaaagt 172  Q
    |||||| | ||||| |||| |||||||||||||||| |||||||||||| ||||||||  | ||||| |||||||||||  |||||||    
T  25477501 ctgaacctctcaagatagaaatttgcataacccccatggtacctcctatatccttttctttactttgttttttcccccctattaaagt 25477588  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 25469577 - 25469645
Alignment:
Q  44 aactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcat 112  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||| | || || |||| ||||||||    
T  25469577 aactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcat 25469645  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 28475016 - 28475072
Alignment:
Q  192 ttttgaatttatactctagcattttatct--tattcttcagtttttcaaatgccaaa 246  Q
    ||||||||||||||| |||||||||||||   |||| ||||||||| ||||||||||    
T  28475016 ttttgaatttatactatagcattttatctcaaattcatcagtttttgaaatgccaaa 28475072  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 32557806 - 32557754
Alignment:
Q  196 gaatttatactctagcattttatctta--ttcttcagtttttcaaatgccaaa 246  Q
    |||| |||||||||||||||||||| |  ||| ||||||||||||||||||||    
T  32557806 gaatatatactctagcattttatctcaaattcatcagtttttcaaatgccaaa 32557754  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 32662053 - 32662009
Alignment:
Q  42 gcaactctttcatcagagttgcttgtgattccatttggttcttct 86  Q
    ||||||| ||| |||||||| ||| ||||||||||||||||||||    
T  32662053 gcaactccttcctcagagttccttttgattccatttggttcttct 32662009  T

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Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 7970014 - 7969877
Alignment:
Q  20 gaacgtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcataaccccc 119  Q
    ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||||| |||||||||||||||    
T  7970014 gaacgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctctcaagctagacatttgcataaccccc 7969915  T
Q  120 agggtacctcctatttccttttcaatgctttggttttt 157  Q
    | ||||   ||||| ||||||||  |||||||||||||    
T  7969914 acggtatgccctatctccttttctttgctttggttttt 7969877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 37577114 - 37577219
Alignment:
Q  37 ctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcataacccccagggtacctcctatttc 136  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||||||||| | || ||||||| ||||||||| |||||| |||||||||||| ||    
T  37577114 ctttatcaactctttcattagagttccttgtgattccatttggttcttctgaacctctcgagctagaaatttgcatatcccccatggtacctcctatatc 37577213  T
Q  137 cttttc 142  Q
    ||||||    
T  37577214 cttttc 37577219  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 37577263 - 37577324
Alignment:
Q  192 ttttgaatttatactctagcattttatct--tattcttcagtttttcaaatgccaaacaaag 251  Q
    |||||||||||||||||||||||| ||||   |||| |||||||||||||||||||| ||||    
T  37577263 ttttgaatttatactctagcatttaatctcaaattcatcagtttttcaaatgccaaaaaaag 37577324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 21524552 - 21524653
Alignment:
Q  44 aactctttcatcagagttgcttgtgattccatttggttcttctgaact---tgtcaagctagatatttgcataacccccagggtacctcctatttccttt 140  Q
    ||||||||||| |||||  |||||||||||||||||||||| |||||    |   ||||||||||||||||||||||||| |||||||||||| ||||||    
T  21524552 aactctttcatgagagtgccttgtgattccatttggttcttttgaaccacctcataagctagatatttgcataacccccatggtacctcctatctccttt 21524651  T
Q  141 tc 142  Q
    ||    
T  21524652 tc 21524653  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 16756981 - 16757064
Alignment:
Q  37 ctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcataaccccca 120  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| | || |||| |  ||||||||||| ||||    
T  16756981 ctttagcaactctttcatcagagttccttgtgattccaattggttcttctgaacctctcgagcttgtaatttgcataactccca 16757064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 16752463 - 16752554
Alignment:
Q  24 gtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacttgtcaagctagatatttgcataac 115  Q
    |||||||||||| |||||| |||||||||| ||||||| ||| ||||||||  |||||||||  ||| | |||||||||| |||||||||||    
T  16752463 gtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttcttccaaacctctcaagctagaaatttgcataac 16752554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 16752637 - 16752694
Alignment:
Q  191 attttgaatttatactctagcattttatct--tattcttcagtttttcaaatgccaaa 246  Q
    |||||||||||||||||||||| |||||||   ||||||| |||||||| ||||||||    
T  16752637 attttgaatttatactctagcaatttatctcaaattcttcggtttttcacatgccaaa 16752694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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