View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14915_low_4 (Length: 676)

Name: NF14915_low_4
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14915_low_4
NF14915_low_4
[»] chr8 (11 HSPs)
chr8 (333-676)||(15792555-15792898)
chr8 (18-301)||(15792898-15793181)
chr8 (179-564)||(15806389-15806769)
chr8 (370-562)||(15800879-15801072)
chr8 (415-570)||(15698399-15698553)
chr8 (151-261)||(15801160-15801270)
chr8 (370-547)||(15814289-15814466)
chr8 (370-493)||(15712930-15713053)
chr8 (577-657)||(15800756-15800836)
chr8 (18-83)||(15793493-15793558)
chr8 (627-671)||(15698304-15698348)


Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 333 - 676
Target Start/End: Complemental strand, 15792898 - 15792555
Alignment:
Q  333 ttggaatgtctagtatattatataaagtgaatttggtctaaaaattgagaaaagaaatgcaacattttcataactgatattgttgcaggcaagcaggaag 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15792898 ttggaatgtctagtatattatataaagtgaatttggtctaaaaattgagaaaagaaatgcaacattttcataaatgatattgttgcaggcaagcaggaag 15792799  T
Q  433 gatcaaggaaaactaaaaccttaatcatcatcttagtaactgtacctttggcagtagctctgctcagctgttgtgtctactattgctggagaaagaatgg 532  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  15792798 gatcaagtaaaactaaaaccttaatcatcatcttagtaactgtacctttggcagtagctctactaagctgttgtgtctactattgctggagaaagaatgg 15792699  T
Q  533 gttaggtaaaggtaattctaacaagttacatacatgttgaaatcgaaagttctctaaattcattttgcaaaattacctatgataattagtatcaattcaa 632  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  15792698 gttaggtaaaggtaattataacaagttacatacatgttgaaatcgaaagttctctaagttcattttgcaaaattacctatgataatacgtatcaattcaa 15792599  T
Q  633 acttactagcttccttgctaagtggatttttcttgaggaccact 676  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  15792598 acttactagcttccttgctaggtggatttttcttgaggaccact 15792555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 15793181 - 15792898
Alignment:
Q  18 gtctatgctatagcgatgaacttctctcgcgaattactcacctatcttatctcttgaaactcccaatttttcttttcttcgtgatacacatacagaatat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  15793181 gtctatgctatagcgatgaacttctctcgcgaattactcacctttcttatctcttgaaagtcccaatttttcttttcttcatgatacacatacagaatat 15793082  T
Q  118 aaacaaaaaccattgtgtctaatgttttatatcattattattcaagagatcatgcaggaagcacaagggaaggtctaatatttgagcaacaagaaaaatg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15793081 aaacaaaaaccattgtgtctaatgttttatatcattattattcaagagatcatgcaggaagcacaaaggaaggtctaatatttgagcaacaagaaaaatg 15792982  T
Q  218 taaatacacattttcaacaaacaatgaacttgcaaaatatgttagtgaatttttaaacaattgtttaaaatgtaagccttcact 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15792981 taaatacacattttcaacaaacaatgaacttgcaaaatatgttagtgaatttttaaacaattgtttaaattgtaagccttcact 15792898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 179 - 564
Target Start/End: Complemental strand, 15806769 - 15806389
Alignment:
Q  179 cacaagggaaggtctaatatttgagcaacaagaaaaatgtaaatacacattttcaacaaacaatgaacttgcaaaatatgttagt-gaatttttaaacaa 277  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |  ||||||| || ||    
T  15806769 cacaagggaaggtctaatatatgagcaacaagaaaaatgtaaatacatattttaaacaaacaatgaacttgcaaaatatgttaatcaaattttttaataa 15806670  T
Q  278 ttgtttaaaatgtaagccttcactatctttttctaattagatgcattggcaaaatttggaatgtctagtatattatataaagtgaatttggtctaaaaat 377  Q
    || ||| ||   || |||| |||| | |||||||| || |||||||| | |||| || ||||      |||| ||| | || ||||||  | ||| | ||    
T  15806669 ttattt-aatcctaggcctccactctgtttttctagtttgatgcattcg-aaaagttagaat-----ctatagtatttgaaatgaattcagcctatatat 15806577  T
Q  378 tgagaaa-agaaatgcaacattttcataactgatattgttgcaggcaagcaggaaggatcaaggaaaactaaaaccttaatcatcatcttagtaactgta 476  Q
    | ||||| | |||||||||||||| |||  ||||| | |||||||||||||||||||  ||||  | || ||||| || ||||||||| |||||| |||     
T  15806576 taagaaagaaaaatgcaacatttttatatatgatagtattgcaggcaagcaggaaggggcaagtcataccaaaactttgatcatcatcgtagtaagtgtg 15806477  T
Q  477 cctttggcagtagctctgctcagctgttgtgtctactattgctggagaaagaatgggttaggtaaaggtaattctaacaagttacata 564  Q
    | | ||||||||||||| || || || | || |||||||| ||||| |||||| || ||| || ||||||| | ||||||||||||||    
T  15806476 cttgtggcagtagctctactaagttgctatggctactattactggaaaaagaaaggattaagtgaaggtaaatataacaagttacata 15806389  T

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Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 370 - 562
Target Start/End: Complemental strand, 15801072 - 15800879
Alignment:
Q  370 ctaaaaattgagaaaagaa-atgcaacattttcataactgatattgttgcaggcaagcaggaaggatcaaggaaaactaaaaccttaatcatcatcttag 468  Q
    ||||| |||||||||| || ||||| | |||||||   ||||| |||||||||||||||||||||  |||| ||| |||||||||| ||||||||||| |    
T  15801072 ctaaatattgagaaaacaagatgcagctttttcatgtatgatactgttgcaggcaagcaggaaggtacaagtaaagctaaaaccttgatcatcatcttcg 15800973  T
Q  469 taactgtacctttggcagtagctctgctcagctgttgtgtctactattgctggagaaagaatgggttaggtaaaggtaattctaacaagttaca 562  Q
    ||| | || |  ||||||||||||| || |||||||| ||||||| || ||||||||||||| ||||| |||||||||||| | ||||||||||    
T  15800972 taagtataacagtggcagtagctctactaagctgttgggtctactcttactggagaaagaataggttaagtaaaggtaattattacaagttaca 15800879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 415 - 570
Target Start/End: Complemental strand, 15698553 - 15698399
Alignment:
Q  415 ttgcaggcaagcaggaaggatcaaggaaaactaaaaccttaatcatcatcttagtaactgtacctttggcagtagctctgctcagctgttgtgtctacta 514  Q
    |||||| ||||||||||||  |||| || |  |||||||| |||||||||||||||| |||||   ||||||||||||| ||  | ||||||||||||||    
T  15698553 ttgcagccaagcaggaaggtgcaagtaacaaaaaaaccttgatcatcatcttagtaagtgtactaatggcagtagctctcctatgttgttgtgtctacta 15698454  T
Q  515 ttgctggagaaagaatgggttaggtaaaggtaattctaacaagttacatacatgtt 570  Q
     | ||||||||||||||||||| |||||||||| | ||| ||||||||||||||||    
T  15698453 ctactggagaaagaatgggttatgtaaaggtaactataa-aagttacatacatgtt 15698399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 15801270 - 15801160
Alignment:
Q  151 attattattcaagagatcatgcaggaagcacaagggaaggtctaatatttgagcaacaagaaaaatgtaaatacacattttcaacaaacaatgaacttgc 250  Q
    ||||| ||||||||| | ||||||||| |||| | |||||||| |||||||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  15801270 attatgattcaagaggttatgcaggaaccacatgagaaggtctgatatttgagcaaaaagaaaattgcaaatacacattttcaacaaacaatgaacttgc 15801171  T
Q  251 aaaatatgtta 261  Q
    || | ||||||    
T  15801170 aagacatgtta 15801160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 370 - 547
Target Start/End: Complemental strand, 15814466 - 15814289
Alignment:
Q  370 ctaaaaattgagaaaagaaatgcaacattttcataactgatattgttgcaggcaagcaggaaggatcaaggaaaactaaaaccttaatcatcatcttagt 469  Q
    ||||||||||||||| |||||||||||||||||||  ||||| |||||||||||| ||||| ||  | || || || |||||||| ||||||||||||||    
T  15814466 ctaaaaattgagaaacgaaatgcaacattttcatatatgatagtgttgcaggcaaacaggacggggcgagtaataccaaaaccttgatcatcatcttagt 15814367  T
Q  470 aactgtacctttggcagtagctctgctcagctgttgtgtctactattgctggagaaagaatgggttaggtaaaggtaa 547  Q
    || |||||   ||||||||||||| || || |||| |||||| || | | ||||||| ||| |||||  |||||||||    
T  15814366 aagtgtactggtggcagtagctctactaagttgttctgtctattactaccggagaaaaaataggttaaataaaggtaa 15814289  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 15713053 - 15712930
Alignment:
Q  370 ctaaaaattgagaaaagaaatgcaacattttcataactgatattgttgcaggcaagcaggaaggatcaaggaaaactaaaaccttaatcatcatcttagt 469  Q
    |||||||||||| | ||||||||| |||||| |||  ||  ||| |||||| |||||||||||| ||||| || |  |||||||| | ||||||||||||    
T  15713053 ctaaaaattgagcacagaaatgcatcattttaatacatgtcatttttgcagccaagcaggaaggttcaagtaacaaaaaaaccttgaccatcatcttagt 15712954  T
Q  470 aactgtacctttggcagtagctct 493  Q
    || |||||   |||||||||||||    
T  15712953 aagtgtactaatggcagtagctct 15712930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 657
Target Start/End: Complemental strand, 15800836 - 15800756
Alignment:
Q  577 gaaagttctctaaattcattttgcaaaattacctatgataattagtatcaattcaaacttactagcttccttgctaagtgg 657  Q
    ||||||||||||| || ||||| |||||||||||||||  || ||| || |||||||| | ||||||||||||||| ||||    
T  15800836 gaaagttctctaagttaattttacaaaattacctatgacgatgagtctctattcaaacatcctagcttccttgctaggtgg 15800756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 15793558 - 15793493
Alignment:
Q  18 gtctatgctatagcgatgaacttctctcgcgaattactcacctatcttatctcttgaaactcccaa 83  Q
    |||||||| || ||||||||||||||||  ||||||  |||   ||||||||||||||||||||||    
T  15793558 gtctatgcaattgcgatgaacttctctcatgaattagccactcttcttatctcttgaaactcccaa 15793493  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 671
Target Start/End: Complemental strand, 15698348 - 15698304
Alignment:
Q  627 attcaaacttactagcttccttgctaagtggatttttcttgagga 671  Q
    ||||||||||||||||||||||| || |||||||| | |||||||    
T  15698348 attcaaacttactagcttccttggtaggtggatttctgttgagga 15698304  T

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