View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_42 (Length: 245)
Name: NF14915_low_42
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 44496252 - 44496459
Alignment:
| Q |
21 |
tgaaatcaaacaattgagctcaaatagttaataaatttcatcaaattacaaattgttcaaaataatctgaatttgatttatgagtgaaataattattgat |
120 |
Q |
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| T |
44496252 |
tgaaaccaaacaattgagctcaaatagctaataaatttcatcaaattataaattgttcaaaataatctgagtttgatttatgagtaaaataattattgat |
44496351 |
T |
|
| Q |
121 |
cagactttaattacctcttagtcagactctagatatcaaagatcctttcctctaaaactgagagttaacataaaaaattatagtgcaattgaatacaact |
220 |
Q |
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| T |
44496352 |
cagactttaattacctcttagtcggactctaaataccaaagatcctttcctctaaaactgagagttaacataaaaaattatagagcaattgaatacaact |
44496451 |
T |
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| Q |
221 |
taaattct |
228 |
Q |
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|||||||| |
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| T |
44496452 |
taaattct |
44496459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 20239257 - 20239334
Alignment:
| Q |
60 |
atcaaattacaaattgttcaaaataatctgaatttgatttatgagtgaaataattattgatcagactttaattacctc |
137 |
Q |
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| T |
20239257 |
atcaaatgacaaattattcaaaagaatctgagtttgattttcaaataaaacaattcttgaccagactttaattacctc |
20239334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 22133241 - 22133318
Alignment:
| Q |
60 |
atcaaattacaaattgttcaaaataatctgaatttgatttatgagtgaaataattattgatcagactttaattacctc |
137 |
Q |
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| T |
22133241 |
atcaaatgacaaattattcaaaagaatctgagtttgattttcaaataaaacaattcttgaccagactttaattacctc |
22133318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 8352369 - 8352410
Alignment:
| Q |
24 |
aatcaaacaattgagctcaaatagttaataaatttcatcaaa |
65 |
Q |
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| T |
8352369 |
aatcaaacaattgagctgaaatagttaatgaatttcaccaaa |
8352410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 28679591 - 28679635
Alignment:
| Q |
38 |
gctcaaatagttaataaatttcatcaaattacaaattgttcaaaa |
82 |
Q |
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|||||||| |||||||||||| ||||||| || |||||||||||| |
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| T |
28679591 |
gctcaaatggttaataaattttatcaaatgacgaattgttcaaaa |
28679635 |
T |
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