View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_43 (Length: 240)
Name: NF14915_low_43
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 37876919 - 37876715
Alignment:
| Q |
19 |
aatatgggtggctttaagggtcttaggaatagtttgaagttgctagcat--tattcttttagcaatctgaatgccgtggttcttaatttcgtgaatgggg |
116 |
Q |
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| T |
37876919 |
aatatgggtggctttaagggtcttaggaatagtttgaagttgctagcatattattcttttagcaatctgaatgccatggttcttaatttcgtgaatgggg |
37876820 |
T |
|
| Q |
117 |
taaggtttccgaacgaacgaataaggaatgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcgcatgaatg |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
37876819 |
taaggtttccgaacgaacgaataaggaacgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcacaagaatg |
37876720 |
T |
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| Q |
217 |
attgt |
221 |
Q |
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||||| |
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| T |
37876719 |
attgt |
37876715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 23894762 - 23894966
Alignment:
| Q |
19 |
aatatgggtggctttaagggtcttaggaatagtttgaagttgctagcat--tattcttttagcaatctgaatgccgtggttcttaatttcgtgaatgggg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23894762 |
aatatgggtggctttaagggtcttaggaatagtttgaagttgctagcatattattcttttagcaatctgaatgccatggttcttaatttcgtgaatgggg |
23894861 |
T |
|
| Q |
117 |
taaggtttccgaacgaacgaataaggaatgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcgcatgaatg |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
23894862 |
taaggtttccgaacgaacgaataaggaacgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcacaagaatg |
23894961 |
T |
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| Q |
217 |
attgt |
221 |
Q |
| |
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||||| |
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|
| T |
23894962 |
attgt |
23894966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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