View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_49 (Length: 212)
Name: NF14915_low_49
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_49 |
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| [»] scaffold0038 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 52335613 - 52335476
Alignment:
| Q |
16 |
tattcttctacatgtttatttgtagggtannnnnnnngttcaagcgaccctcatggattgttaacttttatccaccttaagagttatttaattttttatt |
115 |
Q |
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| T |
52335613 |
tattcttctacatgtttatttgtagggtaatttttttgttcaagtgaccctcatggattgttaacttttatccatcttaagagttatttaattttttatt |
52335514 |
T |
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| Q |
116 |
ttgaaataaagaaccaattgcgaaataattttcacaac |
153 |
Q |
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| T |
52335513 |
ttgaaataaagaaccaattgcgaaataattttcacaac |
52335476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 43592277 - 43592133
Alignment:
| Q |
16 |
tattcttctacatgtttatttgtagggtannnnnnnngttcaagcgaccctcatggattgttaacttttatccaccttaagagttatttaattttttatt |
115 |
Q |
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| T |
43592277 |
tattcttctatatgtttatttgtagggtaatttttttgttcaagtgaccctcatggattgttaacttttatccaccttaagagttatgtaattttttatt |
43592178 |
T |
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| Q |
116 |
ttgaaataaagaaccaattgcgaaataattttcacaaccattaaa |
160 |
Q |
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| T |
43592177 |
ttgaaataaagaaccaattgtgaaataattttcacaaccattaaa |
43592133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 115629 - 115774
Alignment:
| Q |
16 |
tattcttctacatgtttatttgtagggtannnnnnnn-gttcaagcgaccctcatggattgttaacttttatccaccttaagagttatttaattttttat |
114 |
Q |
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||||||||||||||||||||||| ||||| ||||||| |||||||||| || ||||||||||||||| |||||||||||||||||||||||| |
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| T |
115629 |
tattcttctacatgtttatttgtggggtaattttttttgttcaagtgaccctcatgaatcgttaacttttatccatcttaagagttatttaattttttat |
115728 |
T |
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| Q |
115 |
tttgaaataaagaaccaattgcgaaataattttcacaaccattaaa |
160 |
Q |
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| T |
115729 |
tttgaaacaaagaaccaattacgaaataattttcacaaccattaaa |
115774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 28324314 - 28324459
Alignment:
| Q |
16 |
tattcttctacatgtttatttgtagggtannnnnnnn-gttcaagcgaccctcatggattgttaacttttatccaccttaagagttatttaattttttat |
114 |
Q |
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||||||||||||||||||||||| ||||| ||||||| |||||||||| || ||||||||||||||| |||||||||||||||||||||||| |
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| T |
28324314 |
tattcttctacatgtttatttgtggggtaattttttttgttcaagtgaccctcatgaatcgttaacttttatccatcttaagagttatttaattttttat |
28324413 |
T |
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| Q |
115 |
tttgaaataaagaaccaattgcgaaataattttcacaaccattaaa |
160 |
Q |
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| T |
28324414 |
tttgaaacaaagaaccaattacgaaataattttcacaaccattaaa |
28324459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 47863434 - 47863529
Alignment:
| Q |
65 |
ctcatggattgttaacttttatccaccttaagagttatttaattttttattttgaaataaagaaccaattgcgaaataattttcacaaccattaaa |
160 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47863434 |
ctcatggattgttaacttttatccacatgaagagttatttaattttttattttgaaataaagaaccaattgcaaaataattttcacaaccattaaa |
47863529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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