View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_50 (Length: 208)
Name: NF14915_low_50
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_50 |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 31992122 - 31992315
Alignment:
| Q |
1 |
attctttaaccaacaaccatacattggaaaaaatgaacaattagaaagaacaatattaattagttttaagataattgtcatattttaatgcaagtgtcat |
100 |
Q |
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| T |
31992122 |
attctttaaccaacaaccatacattggaaaaaatgaacaattagaaagaacaatattaattagttttaagataattgtcatattttaatgcaagtgtcat |
31992221 |
T |
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| Q |
101 |
tctgatctgcactttattctgataagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattcttttatcttatattagttca |
194 |
Q |
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| T |
31992222 |
tctgatctgcactttattctgataagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattcttttatcttatattagttca |
31992315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 20971465 - 20971532
Alignment:
| Q |
124 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattcttttatcttatattagt |
191 |
Q |
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| T |
20971465 |
aagcaaattgaacaactaaaatctgatcaattatcatatcatgatttattattttatcaaatattagt |
20971532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 20974044 - 20974098
Alignment:
| Q |
124 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattctttt |
178 |
Q |
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| T |
20974044 |
aagcaaattgagcaactaaattctgatcgattttcatatcttgatttattctttt |
20974098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 41405063 - 41405130
Alignment:
| Q |
124 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattcttttatcttatattagt |
191 |
Q |
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| T |
41405063 |
aagcaaattgaacaactaaaatcttatcaattttcatatcatgatttattattttatcaaatattagt |
41405130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 7315 - 7382
Alignment:
| Q |
124 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattcttttatcttatattagt |
191 |
Q |
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| T |
7315 |
aagcaaattgaacaactaaaatcttatcaattttcatatcatgatctattattttatcaaatattagt |
7382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 1118630 - 1118560
Alignment:
| Q |
18 |
catacattggaaaaaatgaacaattagaaagaacaatattaattagttttaagataattgtcatattttaat |
89 |
Q |
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| T |
1118630 |
catacattggaaaaaatggaaaattagaaggcacaatattaattagttttaaaat-agtgtcatattttaat |
1118560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 5768763 - 5768694
Alignment:
| Q |
42 |
tagaaagaacaatattaattagttttaagataattgtcatattttaatgcaagtgtcattctgatctgcac |
112 |
Q |
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| T |
5768763 |
tagaaagaacaatattaattagttttaa-agtatcgtcttattttaatttaagtgtcattttgctctgcac |
5768694 |
T |
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