View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_6 (Length: 578)
Name: NF14915_low_6
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 120 - 556
Target Start/End: Complemental strand, 10887768 - 10887332
Alignment:
| Q |
120 |
taggttaggtatactttgtattattatctggggcacgtgaaactgtttttaactgcctgatagaccaagttgtatgaagtaccttttcaattggaataag |
219 |
Q |
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| T |
10887768 |
taggttaggtatactttgtattattatctggggcacgtgaaactgtttttaactgccttatacaccaagttgtatgaagtaccttttcaattggaataag |
10887669 |
T |
|
| Q |
220 |
ggcttggtcctctggatgatcttctcgacatttgagtatcgtcaagttacaatgatgtgcatacagctcttttagtgcaggccattctagcttatgtaga |
319 |
Q |
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| T |
10887668 |
ggcttggtcctctggatgatcttctcgacatttgagtatcgtcaagttacaaggatgtgcatgcagctcttttagtgcaggccattctagcttatgtaga |
10887569 |
T |
|
| Q |
320 |
cgaggataaaagtatttgagccttggcaattttattaggcgcattgtggtcagttgaggaaactcttttatttctccttctgcaggtatttcatccttcg |
419 |
Q |
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| T |
10887568 |
cgaggataaaagtatttgagccttggcaagtttattaggtgcattgtggtcagttgaggaaactcttttatttctccttctgcaggtatttcatccttcg |
10887469 |
T |
|
| Q |
420 |
aaaatatttctaccagctcctcacagtacgctgcactaagcacctcgagtctagtaagatctttagccaccgaagcaggaaacaagtatttaaggttatc |
519 |
Q |
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| T |
10887468 |
aaaatatttctaccagctcctcacagttcgttgcactaagcaccttgagtctagtaagatctttagccaccgaagcaggaaacaagtatttaaggttatc |
10887369 |
T |
|
| Q |
520 |
acatcccataacactcatttcttgtagcacttgaagg |
556 |
Q |
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| T |
10887368 |
acattctgtaacactcatttcttgtagtacttgaagg |
10887332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 199 - 556
Target Start/End: Complemental strand, 10855537 - 10855174
Alignment:
| Q |
199 |
taccttttcaattggaataagggcttggtcctctggatgatcttctcgacatttgagtatcgtcaagttacaatgatgtgcatacagctcttttagtgca |
298 |
Q |
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||||||||||| ||||| ||||||||| |||||||||||||||||| |||||| ||||||| |||||||| ||| ||||| || |||||||| |
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| T |
10855537 |
taccttttcaactggaacaagggcttgctcctctggatgatcttcttgacattcgagtatcactaagttacaccgatatgcatgcaattcttttagcatg |
10855438 |
T |
|
| Q |
299 |
ggccattctagcttatgtagacgaggataaaagtatttgagccttggcaattttattaggcgcattgtggtcagttgaggaaac------tcttttattt |
392 |
Q |
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||||||||||||||||||| || | ||||||||||||||||| |||||||||||||| | || || |||||| ||||||| |||||| || |
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| T |
10855437 |
ggccattctagcttatgtaaaccacgataaaagtatttgagcgctggcaattttattatgtacaatgaggtcagagaaggaaacattaactcttttgttg |
10855338 |
T |
|
| Q |
393 |
ctccttctgcaggtatttcatccttcgaaaatatttctaccagctcctcacagtacgctgcactaagcacctcgagtctagtaagatctttagccaccga |
492 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||| | |||| | | | ||||||| ||| |||||||||||||||||||||||||| |
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| T |
10855337 |
ctccttctgcaggtatttcatcctctgaaaatatttctaccaactctttacagcgtgttactctaagcagctcaagtctagtaagatctttagccaccga |
10855238 |
T |
|
| Q |
493 |
agcaggaaacaagtatttaaggttatcacatcccataacactcatttcttgtagcacttgaagg |
556 |
Q |
| |
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||||||||||| ||||||||| |||||||| | | |||| ||||||||||||||||||||||| |
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| T |
10855237 |
tgcaggaaacaaatatttaagggtatcacattcaaaaacattcatttcttgtagcacttgaagg |
10855174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 10887903 - 10887786
Alignment:
| Q |
8 |
agcagagaagcattggatagtgacgactgatgagctttaggaattaaatttattgtttaaatatcatcaattgaataaaaataggaatagattccagtga |
107 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10887903 |
agcatagaagaattggatagtgacgactgatgagctttaggaattaaatttattgtttaaatatcatcaattgaataaaaataggaatagattccagtga |
10887804 |
T |
|
| Q |
108 |
tagatacatttataggtt |
125 |
Q |
| |
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|||||||||||||||||| |
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| T |
10887803 |
tagatacatttataggtt |
10887786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 10855948 - 10855881
Alignment:
| Q |
21 |
tggatagtgacgactgatgagctttaggaattaaatttattgtttaaatatcatcaattgaataaaaa |
88 |
Q |
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|||||| ||| |||| ||||||||||||||||| ||| ||||||||||||||||| ||| |||||||| |
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| T |
10855948 |
tggatattgatgacttatgagctttaggaattagattaattgtttaaatatcatccattaaataaaaa |
10855881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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