View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14915_low_8 (Length: 500)
Name: NF14915_low_8
Description: NF14915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14915_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 28312939 - 28312454
Alignment:
| Q |
1 |
gaagaatataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagatgcaatggcatcaccttg |
100 |
Q |
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| T |
28312939 |
gaagaatataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagattcaacggcatcaccttg |
28312840 |
T |
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| Q |
101 |
gtaggtgatgatgtcgtttctatatgtaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtggaataaggattaag |
200 |
Q |
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| T |
28312839 |
gtaggtgatgatgtcgtttctatatggaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtggaataaggattaag |
28312740 |
T |
|
| Q |
201 |
aaaacaggttttgtattgtacagaggcattgctctctataaatctgttagatatggtgaaagctgaagtttcaataatatatatag----nnnnnnnnnn |
296 |
Q |
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| T |
28312739 |
aaaacaggttttgtattgtacagaggcattgctctctataaatctgttagatatggtgaaagctgaagtttcaataatatatatagtttttttttttatt |
28312640 |
T |
|
| Q |
297 |
nnggaaaatatatatgtatagagctgttttgtgtgttgtatgtagagnnnnnnngtcagcggagaaaataaaattctttaaatctcatcttacattaatg |
396 |
Q |
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| T |
28312639 |
ttggaaaatatatatgtatagagctgttttgtgtgtggtatgtagaggttttttgtcagcggagaaaataaaattctttaaatctcatcttacattaatg |
28312540 |
T |
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| Q |
397 |
ttgactttcgacagtactaggaaaatggtgattataactatgtgattttggacattgtataagacaggtttccctaaatgcaattt |
482 |
Q |
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| T |
28312539 |
ttgactttcgatagtactaggaaaatggtgattataactatgtgattttggacattgtataagacaggtttccctaaatgcaattt |
28312454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 28316069 - 28315825
Alignment:
| Q |
8 |
ataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagatgcaatggcatcaccttggtaggtg |
107 |
Q |
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| T |
28316069 |
ataagaggctctgccaacactaaatggcttgtttatgccgttttctactttagtaagttgaatggtaccatttgatgcaatggcatcaccttggtaggtg |
28315970 |
T |
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| Q |
108 |
atgatgtcgtttctatatgtaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtggaataaggattaagaaaacag |
207 |
Q |
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| T |
28315969 |
atgatttcgtttctatatggaccaaaaaaattcgagaattcaaaagataaattccaattatgatggagcatgaggagtggaagaaggattaagaaaacgg |
28315870 |
T |
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| Q |
208 |
gttttgtattgtacagaggcattgctctctataaatctgttagat |
252 |
Q |
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| T |
28315869 |
gttttgtattgtatagaggcatggctatctataaatttgttagat |
28315825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 28320376 - 28320134
Alignment:
| Q |
8 |
ataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagatgcaatggcatcaccttggtaggtg |
107 |
Q |
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| T |
28320376 |
ataagaggctctgccaacactatatggcatgtttatgccgttatttactttagtaagttgaatggtaccatttgattcaacggcatcaccttcgtagttg |
28320277 |
T |
|
| Q |
108 |
atgatgtcgtttctatatgtaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtggaataaggattaagaaaacag |
207 |
Q |
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| T |
28320276 |
atgatgtcgtttatatatggaccgtaaaaattcgagagttcaaaagataaatcccaattgcgatgtagcatgaggagtggaagaaggattaagaaaacgg |
28320177 |
T |
|
| Q |
208 |
gttttgtattgtacagaggcattgctctctataaatctgttag |
250 |
Q |
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| T |
28320176 |
gttttgtattgtatagaggcatggctttctacaaatttgttag |
28320134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 453
Target Start/End: Complemental strand, 28315740 - 28315644
Alignment:
| Q |
359 |
agaaaataaaattctttaaatctcatcttaca---ttaatgttgactttcgacagtactaggaaaatggtgattataactatgtgattttggacattg |
453 |
Q |
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||||||||||||||||||| | |||||||||| |||||||||||||| || || || ||||||||||||||| ||| |||| ||||||||||||| |
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| T |
28315740 |
agaaaataaaattctttaa-tatcatcttacaatgttaatgttgacttttgatagaacaaggaaaatggtgattgaaacaatgtcattttggacattg |
28315644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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