View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14916_high_10 (Length: 308)

Name: NF14916_high_10
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14916_high_10
NF14916_high_10
[»] chr5 (16 HSPs)
chr5 (11-308)||(11048966-11049263)
chr5 (15-301)||(10217065-10217353)
chr5 (36-295)||(10717262-10717521)
chr5 (21-295)||(10741021-10741295)
chr5 (44-298)||(10604388-10604642)
chr5 (21-308)||(10763442-10763729)
chr5 (55-295)||(10564674-10564914)
chr5 (15-296)||(10611317-10611598)
chr5 (32-277)||(10747355-10747600)
chr5 (34-295)||(10580617-10580878)
chr5 (127-282)||(19606200-19606355)
chr5 (140-247)||(10588800-10588907)
chr5 (135-301)||(10558629-10558795)
chr5 (172-274)||(9836671-9836773)
chr5 (177-273)||(10652546-10652642)
chr5 (176-273)||(10660429-10660526)
[»] chr2 (1 HSPs)
chr2 (15-307)||(17923713-17924005)
[»] chr6 (5 HSPs)
chr6 (15-307)||(12948251-12948543)
chr6 (15-295)||(12957685-12957965)
chr6 (15-295)||(12899177-12899457)
chr6 (15-295)||(12906797-12907077)
chr6 (15-295)||(12931886-12932166)
[»] chr3 (1 HSPs)
chr3 (40-92)||(31467687-31467739)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 11049263 - 11048966
Alignment:
Q  11 caaaggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatc 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11049263 caaaggtagaaaacatgcaacaaaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcatttattataattatc 11049164  T
Q  111 acctggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatg 210  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11049163 acctggatgaaaaaaagaaaccaaaaaccatcttttgattcaccaacaattgatcaactagataaagtttcataccaagatttacatcaaggaaccgatg 11049064  T
Q  211 gattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgctgtgaaagtcttc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11049063 gattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttc 11048966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 10217353 - 10217065
Alignment:
Q  15 ggtagaaaacatgcaacacaccataatttcaggttggtatcagtga--tagttagtgtggtttcttttcttatcatactttcattcattataattatcac 112  Q
    ||||| |||||||||||| || |||||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10217353 ggtaggaaacatgcaacaaactataattccaggttgatatcagtgagatagttagtgtggtttcttttcttatcatactttcatttattataattatcac 10217254  T
Q  113 ctggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatgga 212  Q
     ||||||       |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||     
T  10217253 ttggatgaaaaaaagaaaccaaaatccatcttttgattcaccaacaatcgatcaactagctaaagtttcataccaagacttacatcaaggaactgatggg 10217154  T
Q  213 ttctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgctgtgaa 301  Q
    ||||| |||||||||||||||||||||||| |||| |||| |||||| || || ||||||||||| ||||  |||||||||||||||||    
T  10217153 ttctcggataaaaacttgattggatcaggaagttttggttgtgtgtatagcgggaatcttgtgtcagaagttaatgttgttgctgtgaa 10217065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 36 - 295
Target Start/End: Complemental strand, 10717521 - 10717262
Alignment:
Q  36 cataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgnnnnnnngaaaccaaa 135  Q
    |||||||||| |||| || |||||||| |||||||| ||| |||| |  |||||||||||||  ||||   ||||  |||||||       |||||||||    
T  10717521 cataatttcaagttgatagcagtgatatttagtgtgattttttttttgctcatactttcatttgttatttctatctgctggatgaggaagagaaaccaaa 10717422  T
Q  136 aaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattgg 235  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| | |||||||||||| |||||||| | ||||||||||||    
T  10717421 aaccatcctttgattcaccaactattgatcaactagctaaggtttcatatcaagacttacaccgaggaaccgatgggttctcagaaagaaacttgattgg 10717322  T
Q  236 atcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgc 295  Q
    ||||||| |||| ||||||||||||| ||||||||||||||| |||| ||||||||||||    
T  10717321 atcaggaagttttggttctgtgtacaaaggaaatcttgtgtcagaagacaatgttgttgc 10717262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 10741295 - 10741021
Alignment:
Q  21 aaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgn 120  Q
    |||||||||| | | |||||||||| |||| || ||||||||||||| ||| ||||||||||  |||||||||||||  ||||   ||||  |||||||     
T  10741295 aaacatgcaaaaaaacataatttcaagttgatagcagtgatagttagcgtgatttcttttctgctcatactttcatttgttatttctatctgctggatga 10741196  T
Q  121 nnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcaga 220  Q
          |||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| | |||||||||||| ||||||||    
T  10741195 ggaagagaaaccaaaacccatcctttgattcaccaactattgatcaactagctaaggtttcatatcaagacttacaccgaggaaccgatgggttctcaga 10741096  T
Q  221 taaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgc 295  Q
     | ||||||||| ||||||||| |||| ||||||||||||| ||||||||||||| | |||| ||||||||||||    
T  10741095 aagaaacttgatcggatcaggaagttttggttctgtgtacaaaggaaatcttgtgacagaagacaatgttgttgc 10741021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 44 - 298
Target Start/End: Original strand, 10604388 - 10604642
Alignment:
Q  44 caggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgnnnnnnngaaaccaaaaaccatct 143  Q
    ||||||| || ||||||||||| ||||||| ||||||||| ||||||||||| | || |||  ||||   ||| ||       |||||||||| ||||||    
T  10604388 caggttgatagcagtgatagttggtgtggtgtcttttcttttcatactttcagttatcatagctatctattgggtgaggaaaagaaaccaaaacccatct 10604487  T
Q  144 tttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggag 243  Q
    |||||||||||| ||||| ||||||||| ||| ||||||||||| || ||||| |||||||||||||| ||||| |||| |||||||||||||| ||||     
T  10604488 tttgattcaccagcaattcatcaactagataaggtttcataccatgacttacaccaaggaaccgatgggttctcggatagaaacttgattggattaggaa 10604587  T
Q  244 gtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgctgt 298  Q
    |||| ||||||||||||||||||||||||||||| ||||  ||||| ||||||||    
T  10604588 gttttggttctgtgtacagaggaaatcttgtgtcagaagataatgtagttgctgt 10604642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 308
Target Start/End: Complemental strand, 10763729 - 10763442
Alignment:
Q  21 aaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgn 120  Q
    |||||||||| ||  || || ||||||||| || ||||||||||||| ||||||||||||||| ||||||||||||| || |||| ||||  ||| ||      
T  10763729 aaacatgcaaaacgacacaagttcaggttgatagcagtgatagttagcgtggtttcttttcttctcatactttcatttatcataactatctactgcataa 10763630  T
Q  121 nnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcaga 220  Q
          |||| | ||| | |||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||||  |||||||| ||||| ||||| ||    
T  10763629 ggaaaagaaatccaaagcgatcttttgattcaccaacaattgagcaactagataaggtttcataccaagagttactccaaggaacagatgggttctcgga 10763530  T
Q  221 taaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgctgtgaaagtcttc 308  Q
    ||||||| |||| ||||||||| |||  |||  |||||||||||||||||||||||| |||| |||| |||||||| | |||||||||    
T  10763529 taaaaacctgatcggatcaggaagttctggtgatgtgtacagaggaaatcttgtgtcagaagacaatattgttgctataaaagtcttc 10763442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 55 - 295
Target Start/End: Original strand, 10564674 - 10564914
Alignment:
Q  55 cagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgnnnnnnngaaaccaaaaaccatcttttgattcacc 154  Q
    |||||||| |||||||||||||||||||| ||||||||||||| || |||| ||||  |||||||       |||| | ||| | ||||| |||||||||    
T  10564674 cagtgataattagtgtggtttcttttcttctcatactttcatttatcataactatctactggatgaggaaaagaaatccaaagcgatcttgtgattcacc 10564773  T
Q  155 aacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggaggtttcggttct 254  Q
    |||| ||||||||||| |||| ||||| |||||||| |||||||||||||||||||| ||||||  || ||||||||| ||||||||| |||| |||  |    
T  10564774 aacagttgatcaactatctaaggtttcgtaccaagaattacatcaaggaaccgatgggttctcaactagaaacttgataggatcaggaagttttggtctt 10564873  T
Q  255 gtgtacagaggaaatcttgtgtcggaaggcaatgttgttgc 295  Q
    ||||||| ||||||||||||||| ||||  |||||||||||    
T  10564874 gtgtacaaaggaaatcttgtgtcagaagataatgttgttgc 10564914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 10611317 - 10611598
Alignment:
Q  15 ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct 114  Q
    ||||| |||||  ||| ||||||||  |||||| || || |||||||||||||  |||||||||||||| ||||| ||| ||| ||||||| ||||  ||    
T  10611317 ggtaggaaacacccaaaacaccatatattcaggctgatagcagtgatagttagcatggtttcttttcttctcatatttttatttattataactatctact 10611416  T
Q  115 ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt 214  Q
    || |         ||| ||||||  |||||| ||||||||| ||| |||||||  |||||| ||||||| || ||| ||| | |||||||||||||| ||    
T  10611417 gggtaaggaaaataaatcaaaaaagatctttcgattcaccaccaaatgatcaagaagctaaggtttcattccgagacttataccaaggaaccgatgggtt 10611516  T
Q  215 ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgct 296  Q
    |||||||| ||||||||| ||||||||| |||| |||  |||||||||||||||||||||||| |||| |||||||||||||    
T  10611517 ctcagatagaaacttgatcggatcaggaagttttggtgatgtgtacagaggaaatcttgtgtcagaagacaatgttgttgct 10611598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 32 - 277
Target Start/End: Complemental strand, 10747600 - 10747355
Alignment:
Q  32 acaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgnnnnnnngaaac 131  Q
    ||||||||| |||| ||||||  |||||||||||||||| |||| ||||||| ||||||||||||| ||||||| ||||   ||| |        ||||     
T  10747600 acaccataaattcatgttggtcgcagtgatagttagtgttgttttttttcttctcatactttcatttattataactatctattgggtaagaaaaagaaat 10747501  T
Q  132 caaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttga 231  Q
     | |||  |||| | |||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||  | || ||||||  || ||||||||    
T  10747500 aacaaaagatctatcgattcacctacaattgatcaactagctacagtttcataccaagacttacatcatggaacaaacggtttctcaagtagaaacttga 10747401  T
Q  232 ttggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtc 277  Q
    | ||||||||| |||| ||||| ||||||| |||||||||||||||    
T  10747400 tcggatcaggaagttttggttcagtgtacaaaggaaatcttgtgtc 10747355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 295
Target Start/End: Original strand, 10580617 - 10580878
Alignment:
Q  34 accataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgnnnnnnngaaacca 133  Q
    |||||||||||| |||| || |  ||||||| |||||||||||||||||| ||||||||||||| ||||||  ||||   |||||        | ||| |    
T  10580617 accataatttcaagttgatagctatgatagtcagtgtggtttcttttcttctcatactttcatttattatagctatctattggataagtaaaaggaacaa 10580716  T
Q  134 aaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgatt 233  Q
    |||| |||| || |||||  ||| ||| |||||||||| ||| ||||||||| |||| |||||  ||||||| ||||| ||||| |||| |||| ||||     
T  10580717 aaaatcatcattagattcttcaataatagatcaactagataaggtttcatacaaagacttacacaaaggaactgatgggttctcggatagaaacatgatc 10580816  T
Q  234 ggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgc 295  Q
    || |||||| |||| ||||| ||||||| ||||||||||||||| ||||  |||||||||||    
T  10580817 gggtcaggaagttttggttccgtgtacaaaggaaatcttgtgtcagaagataatgttgttgc 10580878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 282
Target Start/End: Complemental strand, 19606355 - 19606200
Alignment:
Q  127 gaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaa 226  Q
    ||||| ||||||||||||  ||||||||||||||||| ||| || |||  ||||| |||||||| ||| |||| | ||||||||| ||||| |||| |||    
T  19606355 gaaacaaaaaaccatcttcagattcaccaacaattgaccaattacctatggtttcctaccaagacttatatcaggcaaccgatgggttctcggatagaaa 19606256  T
Q  227 cttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaag 282  Q
    |||||||||||||||||| |||||||| ||||| | |||||||||| |||| ||||    
T  19606255 cttgattggatcaggaggcttcggttccgtgtataaaggaaatcttatgtcagaag 19606200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 10588907 - 10588800
Alignment:
Q  140 atcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatca 239  Q
    ||||| |||| |||| |||| ||| || |||| ||| ||||||||||||||  ||||||||||||| |||||||||||||||  ||||||||||||||||    
T  10588907 atcttctgatacacctacaactgaccagctagttaaggtttcataccaagaactacatcaaggaactgatggattctcagatggaaacttgattggatca 10588808  T
Q  240 ggaggttt 247  Q
    ||| ||||    
T  10588807 ggaagttt 10588800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 301
Target Start/End: Original strand, 10558629 - 10558795
Alignment:
Q  135 aaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattg 234  Q
    ||||||||||  |||||||||| |||||| ||||| ||||  ||||| |||||||| ||  |||| | ||| ||||| ||||||  || |||||||||||    
T  10558629 aaaccatcttcagattcaccaataattgaccaacttgctatggtttcttaccaagacttgtatcaggcaactgatggcttctcatctagaaacttgattg 10558728  T
Q  235 gatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgctgtgaa 301  Q
    |||||||||| || ||||| ||||| | |||||||||| |||| ||||  || ||| ||||||||||    
T  10558729 gatcaggaggctttggttcggtgtataaaggaaatcttatgtcagaagataaagttattgctgtgaa 10558795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 274
Target Start/End: Complemental strand, 9836773 - 9836671
Alignment:
Q  172 ctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatct 271  Q
    |||| ||||||||||||||  ||||||| ||||| ||||  |||||||||| ||| ||||||||||||||| |||| ||| | || |||| ||||||| |    
T  9836773 ctaaggtttcataccaagaactacatcatggaactgatgagttctcagatagaaatttgattggatcaggaagttttggtaccgtatacaaaggaaatat 9836674  T
Q  272 tgt 274  Q
    |||    
T  9836673 tgt 9836671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 10652642 - 10652546
Alignment:
Q  177 gtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttg 273  Q
    ||||||||| ||||  | || |||||||| |||||||| || | || |||| || |||||| |||| |||| ||||||||||||| |||||||||||    
T  10652642 gtttcatacaaagaccttcaccaaggaactgatggattttctgctagaaacctggttggattaggaagttttggttctgtgtacaaaggaaatcttg 10652546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 10660526 - 10660429
Alignment:
Q  176 agtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttg 273  Q
    ||||||||| |||||  | || |||||||| |||||||| || | || |||| |  |||||| ||||||||| |||||||| |||| |||||||||||    
T  10660526 agtttcatatcaagaccttcaccaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttg 10660429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 17924005 - 17923713
Alignment:
Q  15 ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct 114  Q
    ||||| |||||||||| ||| || || ||||||||| || |||||||||||||||||||||||||| || ||||||||||||| || || | ||||  |     
T  17924005 ggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatactttcatttatcatcactatctaca 17923906  T
Q  115 ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt 214  Q
     ||||       |||| |||||   |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||   |||||||||||||||    
T  17923905 tgatgaggaagagaaatcaaaagagatcttttgattcaccaacaattgatcaactagctaaggtttcataccaagaattacacgtaggaaccgatggatt 17923806  T
Q  215 ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgctgtgaaagtctt 307  Q
    |||||||| |||| |||| ||||||||| |||| ||||| || |||||||||||| |||| || ||||  ||||||||||| || ||||||||    
T  17923805 ctcagatagaaacatgatcggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgttgttgcagttaaagtctt 17923713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 307
Target Start/End: Original strand, 12948251 - 12948543
Alignment:
Q  15 ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct 114  Q
    ||||| ||||||||||  || || || ||||||||| || ||| |||||||||||||||||||||| || ||||||||||||| || |||| ||||  |     
T  12948251 ggtaggaaacatgcaaagcaacaaaagttcaggttgatagcagggatagttagtgtggtttcttttattctcatactttcatttatcataactatctaca 12948350  T
Q  115 ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt 214  Q
     ||||       |||| |||||   ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||   |||||| |||||||    
T  12948351 tgatgaggaaaagaaatcaaaagagatcttttgattcacctacaattgatcaactagctaaggtttcataccaagaattacatgttggaacccatggatt 12948450  T
Q  215 ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgctgtgaaagtctt 307  Q
    |||||||| ||||||||| ||||||||| |||| ||||| || |||||||||||| |||| || ||||  ||||||||||| || ||||||||    
T  12948451 ctcagatagaaacttgatcggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgttgttgcagtaaaagtctt 12948543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 12957685 - 12957965
Alignment:
Q  15 ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct 114  Q
    ||||| ||||||||||  || || || ||||||||| || ||||||||||||||| |||||||||| || ||||||||||||| || |||| ||||  |     
T  12957685 ggtaggaaacatgcaaagcaacacaagttcaggttgatagcagtgatagttagtgcggtttcttttattctcatactttcatttatcataactatctaca 12957784  T
Q  115 ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt 214  Q
     ||||       |||| |||||   ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||   |||||| |||||||    
T  12957785 tgatgaggaaaagaaatcaaaagagatcttttgattcacctacaattgatcaactagctaaggtttcataccaagaattacatgttggaaccaatggatt 12957884  T
Q  215 ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgc 295  Q
    |||||||| ||||||||| ||||||||| |||| ||||| || |||||||||||| |||| || ||||  |||||||||||    
T  12957885 ctcagatagaaacttgatcggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgttgttgc 12957965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 12899177 - 12899457
Alignment:
Q  15 ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct 114  Q
    ||||| ||||||| || ||| || || ||||||||| || |||||||||||||||||||||||||| || ||||||||||||| || |||| ||||  |     
T  12899177 ggtaggaaacatgtaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatactttcatttatcataactatctaca 12899276  T
Q  115 ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt 214  Q
     ||||        ||| |||||   |||||||||||||||| ||||||||||||||||||| ||||| |||||||| |||||   |||||||||||||||    
T  12899277 tgatgagtaaaataaatcaaaagagatcttttgattcaccagcaattgatcaactagctaaggtttcgtaccaagaattacacgtaggaaccgatggatt 12899376  T
Q  215 ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgc 295  Q
    |||||||| ||||||||| ||||||||| |||| ||||| || |||||||||||| | || || ||||  |||||||||||    
T  12899377 ctcagatagaaacttgatcggatcaggaagttttggttccgtatacagaggaaatatagtttcagaagataatgttgttgc 12899457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 12906797 - 12907077
Alignment:
Q  15 ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct 114  Q
    ||||| |||||||||| ||| || || ||||||||| || |||| ||||||||||||||||||||| || ||||||||||||| || |||| ||||  |     
T  12906797 ggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtcatagttagtgtggtttcttttattctcatactttcatttatcataactatctaca 12906896  T
Q  115 ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt 214  Q
     ||||       |||| |||||   |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||   ||||||||||| |||    
T  12906897 tgatgaggaaaagaaatcaaaagagatcttttgattcaccaacaattgatcaactagctaaggtttcataccaagaattacacgtaggaaccgatgaatt 12906996  T
Q  215 ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgc 295  Q
    ||| |||| |||| |||| ||||||||| |||| ||||| || |||| ||||||| |||| || ||||  |||||||||||    
T  12906997 ctcggatagaaacatgatcggatcaggaagttttggttccgtatacaaaggaaatattgtttcagaagataatgttgttgc 12907077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 12931886 - 12932166
Alignment:
Q  15 ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct 114  Q
    ||||| |||||||||| ||| || || ||||||||| || ||||| |||||||||||||||||||| || ||||||||||||| || |||| ||||  |     
T  12931886 ggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgctagttagtgtggtttcttttattctcatactttcatttatcataactatctaca 12931985  T
Q  115 ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt 214  Q
     ||||       |||| || ||   |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||   ||||||||||||||    
T  12931986 tgatgaggaaaagaaatcagaagagatcttttgattcaccaacaattgatcaactagctaaggtttcataccaagaattacatgttggaaccgatggatt 12932085  T
Q  215 ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggcaatgttgttgc 295  Q
    |||| ||| |||| |||| ||||||||| |||| ||||| || |||| ||||||| | ||||| ||||  |||||||||||    
T  12932086 ctcaaatagaaacatgatcggatcaggaagttttggttccgtttacaaaggaaatatagtgtcagaagataatgttgttgc 12932166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 31467739 - 31467687
Alignment:
Q  40 atttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactt 92  Q
    |||||| |||| || ||||||||||||||||||||||||||||| | ||||||    
T  31467739 atttcaagttgatagcagtgatagttagtgtggtttcttttcttcttatactt 31467687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University