View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_high_20 (Length: 247)
Name: NF14916_high_20
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 1481141 - 1480911
Alignment:
| Q |
1 |
tcatgtgtttctatcctactctactcttgtttctctttggagtcttgttagattgcagattggtgtggcatctgtcgccccgaatcaattacaagaccat |
100 |
Q |
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| T |
1481141 |
tcatgtgtttctattctaccctactcttgtttctctttggagtcttgttagattgcagattggtgtggcatctgtcgacccgaatcaattacaagaccat |
1481042 |
T |
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| Q |
101 |
tttgttcattcttcaagtggtatacgagtgtgtcgctcctttatgcagctcctttgactttgttatgtttgggttttatggtgtaagcgcaataatagat |
200 |
Q |
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| T |
1481041 |
tttgttcattcttcaagtggtatacgagtgtgtcgctcctttatgcagctcctttgactttgttatgtttgggttttatggtgtaagcgcaacaacatat |
1480942 |
T |
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| Q |
201 |
tttattcaagaataaggaaaacaggaaaact |
231 |
Q |
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| T |
1480941 |
tttattcaagaataaggaaaacaggaaaact |
1480911 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 10482555 - 10482489
Alignment:
| Q |
112 |
ttcaagtggtatacgagtgtgtcgctcctttatgcagctcctttgactttgttatgtttgggtttta |
178 |
Q |
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| T |
10482555 |
ttcaggtggtttatgagtgcatcgctcttttatgcagctcctttggctttgttgtgtttgggtttta |
10482489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 16169416 - 16169501
Alignment:
| Q |
135 |
gctcctttatgcagctcctttgactttgttatgtttgggttttatggtgtaagcgcaataatagattttattcaagaataaggaaaac |
222 |
Q |
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| T |
16169416 |
gctcttttatgcagcttctttgactttgttgtgtctgagtgttatggactgagcacaacaataga--ttattcaagaacaaggaaaac |
16169501 |
T |
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