View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14916_high_21 (Length: 241)

Name: NF14916_high_21
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14916_high_21
NF14916_high_21
[»] chr5 (3 HSPs)
chr5 (138-227)||(32843705-32843794)
chr5 (150-215)||(36150397-36150462)
chr5 (150-227)||(31529420-31529497)
[»] chr3 (2 HSPs)
chr3 (143-227)||(16893338-16893422)
chr3 (155-227)||(24347400-24347472)
[»] chr2 (1 HSPs)
chr2 (143-227)||(8413592-8413676)
[»] chr1 (3 HSPs)
chr1 (164-226)||(49491565-49491627)
chr1 (153-227)||(50903198-50903272)
chr1 (143-227)||(34565967-34566051)
[»] chr4 (1 HSPs)
chr4 (153-227)||(9241763-9241837)
[»] chr7 (2 HSPs)
chr7 (166-227)||(29465238-29465299)
chr7 (150-195)||(26449308-26449353)
[»] scaffold0753 (1 HSPs)
scaffold0753 (144-227)||(5188-5271)


Alignment Details
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 32843705 - 32843794
Alignment:
Q  138 atcttttttgtaccttctttttattctgatgtaagctcttttgttgttaagggttctgaccctctccagatcttttatagcatttctttg 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||||    
T  32843705 atcttttttgtaccttctttttattctgatgtaagctcttttgttgttaagggttctggccctttcgaggtcttttatagcatttctttg 32843794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 36150462 - 36150397
Alignment:
Q  150 ccttctttttattctgatgtaagctcttttgttgttaagggttctgaccctctccagatcttttat 215  Q
    |||||||||| || || ||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  36150462 ccttctttttgttttgttgtaagcacttttgttgttaagggttctggccctctccagatcttttat 36150397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 31529497 - 31529420
Alignment:
Q  150 ccttctttttattctgatgtaagctcttttgttgttaagggttctgaccctctccagatcttttatagcatttctttg 227  Q
    ||||||| || || |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||  ||||||||    
T  31529497 ccttcttcttgttttgatgtaagcacttttgttgttaagggttctggctctctccaggtcttttatagattttctttg 31529420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 16893338 - 16893422
Alignment:
Q  143 ttttgtaccttctttttattctgatgtaagctcttttgttgttaagggttctgaccctctccagatcttttatagcatttctttg 227  Q
    ||||| ||||||||||| || |||||||||| |||||||||||||| |||||| |||||||||| |||||||||| |||||||||    
T  16893338 ttttgcaccttctttttgttttgatgtaagcacttttgttgttaagagttctggccctctccaggtcttttatagtatttctttg 16893422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 24347400 - 24347472
Alignment:
Q  155 tttttattctgatgtaagctcttttgttgttaagggttctgaccctctccagatcttttatagcatttctttg 227  Q
    ||||| || |||||||| | ||||||||||||||||||  | ||||||||||||||||||||| |||| ||||    
T  24347400 tttttgttttgatgtaatcacttttgttgttaagggtttcggccctctccagatcttttatagaatttatttg 24347472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 8413676 - 8413592
Alignment:
Q  143 ttttgtaccttctttttattctgatgtaagctcttttgttgttaagggttctgaccctctccagatcttttatagcatttctttg 227  Q
    ||||| ||||||||||| || |||||||||||  |||||||||||||| |||| |||||||||| |||||||||| |||||||||    
T  8413676 ttttgcaccttctttttgttttgatgtaagcttctttgttgttaagggatctggccctctccaggtcttttatagtatttctttg 8413592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 49491627 - 49491565
Alignment:
Q  164 tgatgtaagctcttttgttgttaagggttctgaccctctccagatcttttatagcatttcttt 226  Q
    |||||||||| |||||| ||||||||||||||||||||||||| |||||||||| ||||||||    
T  49491627 tgatgtaagcacttttgctgttaagggttctgaccctctccaggtcttttatagaatttcttt 49491565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 50903272 - 50903198
Alignment:
Q  153 tctttttattctgatgtaagctcttttgttgttaagggttctgaccctctccagatcttttatagcatttctttg 227  Q
    ||||||| || |||||||||| |||| |||||||||||||||| | |||||||| |||||||||| |||||||||    
T  50903272 tctttttgttttgatgtaagcactttcgttgttaagggttctggctctctccaggtcttttatagtatttctttg 50903198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 34566051 - 34565967
Alignment:
Q  143 ttttgtaccttctttttattctgatgtaagctcttttgttgttaagggttctgaccctctccagatcttttatagcatttctttg 227  Q
    ||||| || |||||||| || || ||||||| ||||||||| ||||||||||| |||||||||| ||||| |||| |||| ||||    
T  34566051 ttttgcacattctttttgttttgttgtaagcacttttgttgctaagggttctggccctctccaggtctttaatagaatttttttg 34565967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 9241763 - 9241837
Alignment:
Q  153 tctttttattctgatgtaagctcttttgttgttaagggttctgaccctctccagatcttttatagcatttctttg 227  Q
    ||||||| || | |||||||| ||||| ||||||||||||||| |||||||||| |||||||||| |||||||||    
T  9241763 tctttttgtttttatgtaagcacttttattgttaagggttctggccctctccaggtcttttatagtatttctttg 9241837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 29465299 - 29465238
Alignment:
Q  166 atgtaagctcttttgttgttaagggttctgaccctctccagatcttttatagcatttctttg 227  Q
    |||||||| ||||||||||||||||||||  |||||||||| |||||||||| |||||||||    
T  29465299 atgtaagcacttttgttgttaagggttctagccctctccaggtcttttatagtatttctttg 29465238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 26449353 - 26449308
Alignment:
Q  150 ccttctttttattctgatgtaagctcttttgttgttaagggttctg 195  Q
    ||||||||| ||| || ||||||| |||||||||||||||||||||    
T  26449353 ccttcttttaattttgttgtaagcacttttgttgttaagggttctg 26449308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 5271 - 5188
Alignment:
Q  144 tttgtaccttctttttattctgatgtaagctcttttgttgttaagggttctgaccctctccagatcttttatagcatttctttg 227  Q
    |||| ||| ||||||| || | |||||||| ||||| ||||||||||||||| |||||||||| |||||||||| |||| ||||    
T  5271 tttgcaccctctttttgtttttatgtaagcacttttattgttaagggttctggccctctccaggtcttttatagtatttatttg 5188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University