View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14916_low_1 (Length: 633)

Name: NF14916_low_1
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14916_low_1
NF14916_low_1
[»] chr6 (13 HSPs)
chr6 (405-617)||(31045794-31046003)
chr6 (1-122)||(31046290-31046411)
chr6 (511-585)||(31069850-31069924)
chr6 (519-575)||(31035373-31035429)
chr6 (355-405)||(31046071-31046121)
chr6 (405-457)||(31035521-31035573)
chr6 (413-457)||(31056774-31056818)
chr6 (532-583)||(31080494-31080545)
chr6 (511-564)||(31110404-31110457)
chr6 (405-457)||(31080647-31080699)
chr6 (276-325)||(31052043-31052091)
chr6 (207-244)||(31103361-31103398)
chr6 (405-457)||(31110535-31110587)
[»] scaffold0018 (1 HSPs)
scaffold0018 (405-587)||(170727-170904)
[»] chr7 (1 HSPs)
chr7 (210-244)||(9559283-9559317)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 3e-93; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 405 - 617
Target Start/End: Complemental strand, 31046003 - 31045794
Alignment:
Q  405 ttatagggaaaccttcatgcctgttttaaaacatactcgatgtgggacttgttatacctgaagagaaaaacgaaagtctcatgtgaaggttacaagagaa 504  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  31046003 ttatagggaaatcttcatgcctgttttaacacatactcgatgtgggacttgttata--tgaagagaaaaacgaaagtttcatgtgaaggttacaagagaa 31045906  T
Q  505 aagcttcaatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggtttatctctctcacacacatttagttggctgtaccttttt 604  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  31045905 aagcttcaatatataaaggaaatactaatccaattccaaatccaacaagttgcaggaaggtttatctctctctcacacatttagttggctgtacct-ttt 31045807  T
Q  605 tgtatgatagtta 617  Q
    |||||||||||||    
T  31045806 tgtatgatagtta 31045794  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 31046411 - 31046290
Alignment:
Q  1 atgagtaaacaaaccggtaggaagagacaaatcaaattcattcacgacaatatgtcaaattggagtgtgtgaagagaagaagatgaagatggaagtttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||    
T  31046411 atgagtaaacaaaccggtaggaagagacaaatcaaattcattcacgacaatatgttaaattggagtgtgtgaagagaagaagatgaagatggcagtgtag 31046312  T
Q  101 tgatttagtgctttggtatttg 122  Q
    |||||||||| |||||||||||    
T  31046311 tgatttagtggtttggtatttg 31046290  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 511 - 585
Target Start/End: Complemental strand, 31069924 - 31069850
Alignment:
Q  511 caatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggtttatctctctcacacacatt 585  Q
    |||||| | ||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||    
T  31069924 caatatctgaagcaaatactaatccaattccaaatccaacaagtttcaggaaggtctatctctcacacacacatt 31069850  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 519 - 575
Target Start/End: Complemental strand, 31035429 - 31035373
Alignment:
Q  519 aaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggtttatctctct 575  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||    
T  31035429 aaaggaaatactaattcaattccaaatccaacaagtttcaggaaggtctatctctct 31035373  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 31046121 - 31046071
Alignment:
Q  355 aaatgcaatcacctgtaatccataacatcaaccacaataatgacatgatat 405  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  31046121 aaatgcaatcacttgtaatccataacatcaaatacaataatgacatgatat 31046071  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 31035573 - 31035521
Alignment:
Q  405 ttatagggaaaccttcatgcctgttttaaaacatactcgatgtgggacttgtt 457  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||| |||||||    
T  31035573 ttataggaaaaccttcatgactgttttaacacatactcgatgtggaacttgtt 31035521  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 31056818 - 31056774
Alignment:
Q  413 aaaccttcatgcctgttttaaaacatactcgatgtgggacttgtt 457  Q
    |||||||| |||||||||||| |||||||||||||||||||||||    
T  31056818 aaaccttcctgcctgttttaacacatactcgatgtgggacttgtt 31056774  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 532 - 583
Target Start/End: Complemental strand, 31080545 - 31080494
Alignment:
Q  532 atccaattccaaatcaaacaagttgcaggaaggtttatctctctcacacaca 583  Q
    ||||||||||||||| |||||| || | ||||||||||||||||||||||||    
T  31080545 atccaattccaaatccaacaagctgtacgaaggtttatctctctcacacaca 31080494  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 511 - 564
Target Start/End: Complemental strand, 31110457 - 31110404
Alignment:
Q  511 caatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaagg 564  Q
    |||||| |||||||||||||||| |||||||||||| ||||||  |||||||||    
T  31110457 caatatctaaaggaaatactaattcaattccaaatccaacaagcagcaggaagg 31110404  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 31080699 - 31080647
Alignment:
Q  405 ttatagggaaaccttcatgcctgttttaaaacatactcgatgtgggacttgtt 457  Q
    ||||||| |||||||| ||| |||||||| |||||||| ||||||||||||||    
T  31080699 ttataggtaaaccttcgtgcatgttttaacacatactctatgtgggacttgtt 31080647  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 31052091 - 31052043
Alignment:
Q  276 aaaataagactaaattgattgacgaaaacatatcttaagaggccaaaacg 325  Q
    ||||||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  31052091 aaaataagactaaattgatcgacgaaaatatat-ttaagagaccaaaacg 31052043  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 31103398 - 31103361
Alignment:
Q  207 ttagtggtttattattagatttaatagtcttgcatgat 244  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  31103398 ttagtggtttattattagatttaatggtcttgtatgat 31103361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 31110587 - 31110535
Alignment:
Q  405 ttatagggaaaccttcatgcctgttttaaaacatactcgatgtgggacttgtt 457  Q
    ||||||| |||| ||||| | |||||||| ||||||||||||||||| |||||    
T  31110587 ttataggtaaacattcatacatgttttaacacatactcgatgtgggatttgtt 31110535  T

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Target: scaffold0018 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 405 - 587
Target Start/End: Original strand, 170727 - 170904
Alignment:
Q  405 ttatagggaaaccttcatgcctgttttaaaacatactcgatgtgggacttgttata---cctgaagagaaaaacgaaagtctcatgtgaaggttacaaga 501  Q
    ||||||| |||||||| |   |||||||| | |||||||||||||||||||||||    || |||||||||||| |||||||||||||||||||||||||    
T  170727 ttataggtaaaccttcttctatgttttaacatatactcgatgtgggacttgttattatgcccgaagagaaaaaccaaagtctcatgtgaaggttacaaga 170826  T
Q  502 gaa----aagcttcaatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggtttatctctctcacacacattta 587  Q
    |||    |||||||||||| ||||||            ||||||||||| |||||| ||||| |||||||||||||||| |||| |||||    
T  170827 gaagaagaagcttcaatatctaaagg------------aattccaaatccaacaagctgcagaaaggtttatctctctcgcacatattta 170904  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 9559317 - 9559283
Alignment:
Q  210 gtggtttattattagatttaatagtcttgcatgat 244  Q
    |||||||||||||||||| ||||||||||||||||    
T  9559317 gtggtttattattagattcaatagtcttgcatgat 9559283  T

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