View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_low_10 (Length: 444)
Name: NF14916_low_10
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 162 - 429
Target Start/End: Complemental strand, 42802142 - 42801874
Alignment:
| Q |
162 |
gtacatatgagttgatagctgtagaattggttagttgaatttttaatgtatggtaaatttaattgttaaattacatgatgaatgtttgtgaaatactagc |
261 |
Q |
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| T |
42802142 |
gtacatatgagttgatagctgtagaattggttagttgaatttttaatgtatggtaaatttaattgttaaattacatgatgaatgtttgtgaaatactagc |
42802043 |
T |
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| Q |
262 |
ataaaaggaatttttagcttatatttagannnnnnnnaatgaagaggataagcgtagaattgagaagaaatctgagttataaattaaaacggtagttgaa |
361 |
Q |
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| T |
42802042 |
ataaaaggaatttttagcttatatttagattttttttaatgaagaggataagcgtagaattgagaagaaatctgagttataaattcaaacggtagttgaa |
42801943 |
T |
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| Q |
362 |
gtatcttataaaaatatgttataaactagt-nnnnnnnntcgaaatgcgaaaaatttcctcatgattgt |
429 |
Q |
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| T |
42801942 |
gtatcttaaaaaaaaatgttataaactagtaaaaaaaaatcgaaatgcgaaaaatttcctcatgattgt |
42801874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 42802295 - 42802207
Alignment:
| Q |
9 |
gagtgagatgaagtgtgtcttcatttaaaagatgaagaagaataagacgacatttgtttgcgttgagtggcgcaaactatactcaaata |
97 |
Q |
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| T |
42802295 |
gagtgaaatgaagtgtgtcttcatttaaaagatgaagaagaataagacgacatttgtttgcgttgagtggcgcaaactatactcaaata |
42802207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 47740 - 47683
Alignment:
| Q |
37 |
aagatgaagaagaataagacgacatttgtttgcgttgagtggcgcaaactatactcaa |
94 |
Q |
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| T |
47740 |
aagaagaataagaataagacgacatttgtttgagttgagtggcgtaaactatactcaa |
47683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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