View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14916_low_11 (Length: 399)

Name: NF14916_low_11
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14916_low_11
NF14916_low_11
[»] chr1 (4 HSPs)
chr1 (211-389)||(6154786-6154964)
chr1 (20-126)||(6155049-6155155)
chr1 (20-87)||(6153599-6153665)
chr1 (20-95)||(1356274-1356348)
[»] chr5 (4 HSPs)
chr5 (211-386)||(34044207-34044382)
chr5 (20-126)||(34044015-34044121)
chr5 (23-87)||(34044924-34044988)
chr5 (153-186)||(34044148-34044181)
[»] chr6 (1 HSPs)
chr6 (19-87)||(4275074-4275141)
[»] chr2 (1 HSPs)
chr2 (23-126)||(38934602-38934706)
[»] chr4 (1 HSPs)
chr4 (20-94)||(20284068-20284141)
[»] chr3 (1 HSPs)
chr3 (50-87)||(4523210-4523247)
[»] chr8 (1 HSPs)
chr8 (20-116)||(33520848-33520943)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 211 - 389
Target Start/End: Complemental strand, 6154964 - 6154786
Alignment:
Q  211 cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  6154964 cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccatgatcgttgccgacaaaacccagt 6154865  T
Q  311 cacttcgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgtttcat 389  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6154864 cactccgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgtttcat 6154786  T

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Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 6155155 - 6155049
Alignment:
Q  20 cagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattcattcaa 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6155155 cagatcctctccatttgtagagaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattcattcaa 6155056  T
Q  120 tgaatta 126  Q
    |||||||    
T  6155055 tgaatta 6155049  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 6153599 - 6153665
Alignment:
Q  20 cagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga 87  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  6153599 cagatcctctccatttgtagagaaaatggccaat-tcaatttccactcataaaaacatgacacgtgga 6153665  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 1356274 - 1356348
Alignment:
Q  20 cagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaa 95  Q
    |||||||||||||||||| |   |||| | ||||||||||||||  ||||||||||| |||| |||||||||||||    
T  1356274 cagatcctctccatttgtggtagaaattg-caatctcaatttcctttcataaaaacaagacacgtggataagtaaa 1356348  T

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Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 211 - 386
Target Start/End: Original strand, 34044207 - 34044382
Alignment:
Q  211 cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34044207 cttccttctctctcgtttggatttcagcagacccgggaaaaattaagaacctatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt 34044306  T
Q  311 cacttcgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgttt 386  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  34044307 cactccgtcgaccgccgccgttgtcgtatggtcaaacatgaggttgtcatcactgttccttgtgttattgttgttt 34044382  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 34044015 - 34044121
Alignment:
Q  20 cagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattcattcaa 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34044015 cagatcctctccatttgtagagaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttcttattcattcaa 34044114  T
Q  120 tgaatta 126  Q
    |||||||    
T  34044115 tgaatta 34044121  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 34044988 - 34044924
Alignment:
Q  23 atcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga 87  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  34044988 atcctctccatttgtagagaaaatggccaatctcaatttccactcataaaaacatgacacgtgga 34044924  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 34044148 - 34044181
Alignment:
Q  153 gataaacaaaacattgaaaaccacaccacttctg 186  Q
    ||||||||||||||||||||||||||| ||||||    
T  34044148 gataaacaaaacattgaaaaccacaccgcttctg 34044181  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 4275074 - 4275141
Alignment:
Q  19 acagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga 87  Q
    |||||||||||||||||     ||||||||| |||||||||||||| |||||||||||||||| |||||    
T  4275074 acagatcctctccatttaggtagaaaatggc-aatctcaatttccattcataaaaacatgacacgtgga 4275141  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 38934706 - 38934602
Alignment:
Q  23 atcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaa-aatggacggttctgattcattcaatg 121  Q
    |||||||||||||   | ||||||||| ||||||||||||||||| |||||| | |||||||| | ||  ||| |||  ||||||||||| ||||||| |    
T  38934706 atcctctccattttgtgagaaaatggcaaatctcaatttccactcctaaaaataagacatgtgtaaaataaaacaatcaacggttctgatacattcaaag 38934607  T
Q  122 aatta 126  Q
    |||||    
T  38934606 aatta 38934602  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 20284141 - 20284068
Alignment:
Q  20 cagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaa 94  Q
    |||||||||| ||||||| |  |||||||| |||||||||||||| || ||| |||| |||| ||||||||||||    
T  20284141 cagatcctctacatttgtggaaaaaatggc-aatctcaatttccattcttaagaacaagacacgtggataagtaa 20284068  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 4523210 - 4523247
Alignment:
Q  50 caatctcaatttccactcataaaaacatgacatgtgga 87  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  4523210 caatctcaatttccaatcataaaaacaagacatgtgga 4523247  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 33520943 - 33520848
Alignment:
Q  20 cagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattcatt 116  Q
    |||||||||||||||||  | | ||||||||| || ||||||||  | ||||||||| |||| ||||||||||  ||||  | ||||||||||||||    
T  33520943 cagatcctctccatttggtgaggaaatggcca-tcacaatttcctttaataaaaacaggacacgtggataagttgaaatcaatggttctgattcatt 33520848  T

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