View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14916_low_12 (Length: 390)

Name: NF14916_low_12
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14916_low_12
NF14916_low_12
[»] chr8 (5 HSPs)
chr8 (1-375)||(28947365-28947739)
chr8 (1-108)||(36049590-36049692)
chr8 (1-107)||(8407504-8407607)
chr8 (30-107)||(29861400-29861473)
chr8 (51-105)||(35764655-35764709)
[»] chr4 (7 HSPs)
chr4 (1-375)||(34812721-34813092)
chr4 (1-107)||(44555620-44555723)
chr4 (3-99)||(44566985-44567077)
chr4 (7-106)||(31404605-31404700)
chr4 (8-107)||(30070216-30070313)
chr4 (1-37)||(30802412-30802448)
chr4 (75-115)||(37392968-37393008)
[»] chr5 (8 HSPs)
chr5 (1-107)||(2941985-2942089)
chr5 (5-108)||(6588396-6588497)
chr5 (1-87)||(31806639-31806722)
chr5 (1-107)||(6462294-6462398)
chr5 (41-99)||(5657064-5657122)
chr5 (1-107)||(1621463-1621567)
chr5 (1-105)||(7153701-7153803)
chr5 (56-107)||(31677204-31677255)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-105)||(166651-166759)
[»] chr3 (7 HSPs)
chr3 (1-107)||(32326060-32326164)
chr3 (4-107)||(33282361-33282460)
chr3 (4-106)||(30885-30985)
chr3 (1-43)||(25290175-25290217)
chr3 (56-107)||(32582513-32582564)
chr3 (49-106)||(13799981-13800038)
chr3 (1-107)||(37083906-37084011)
[»] chr1 (8 HSPs)
chr1 (1-107)||(23908869-23908973)
chr1 (15-104)||(5799165-5799251)
chr1 (1-101)||(31795398-31795495)
chr1 (25-99)||(33644649-33644722)
chr1 (1-107)||(22593554-22593657)
chr1 (56-107)||(35926612-35926663)
chr1 (1-107)||(31117645-31117746)
chr1 (1-37)||(15801273-15801309)
[»] chr7 (3 HSPs)
chr7 (2-107)||(2404654-2404756)
chr7 (3-106)||(24314210-24314311)
chr7 (3-91)||(87199-87286)
[»] chr2 (9 HSPs)
chr2 (1-90)||(38808817-38808903)
chr2 (1-107)||(27679146-27679251)
chr2 (1-106)||(42139444-42139545)
chr2 (59-107)||(15804464-15804512)
chr2 (1-103)||(33625608-33625707)
chr2 (1-106)||(14477640-14477741)
chr2 (1-46)||(8752584-8752629)
chr2 (1-107)||(44984245-44984351)
chr2 (31-90)||(44810135-44810192)
[»] chr6 (6 HSPs)
chr6 (1-106)||(2046073-2046175)
chr6 (56-108)||(9749907-9749959)
chr6 (48-107)||(9750243-9750302)
chr6 (59-108)||(32448150-32448199)
chr6 (51-105)||(4405557-4405611)
chr6 (1-37)||(25142294-25142330)
[»] scaffold0040 (1 HSPs)
scaffold0040 (51-107)||(49861-49917)


Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 28947365 - 28947739
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28947365 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 28947464  T
Q  101 ctataagtatttgaaaatgatatggtttaacagtccttttgcttctggcatatttggaggttatgatgtaaatggcgatattctatcctcatttttatat 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28947465 ctataagtatttgaaaatgatatggtttaatagtccttttgcttctggcatatttggaggttatgatgtaaatggcgatattctatcctcatttttatat 28947564  T
Q  201 gtgcaatatatatcatcagatttgttttgattgaccnnnnnnnnattattaattctggcaaacatcatgtggtgcatttaaaaatgtattgatgcaaaag 300  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28947565 gtgcaatatatatcatcagatttgttttgattgaccttttttttattattaattctggcaaacatcatgtggtgcatttaaaaatgtattgatgcaaaag 28947664  T
Q  301 atgaatctctggctttaacaaacctaacttggctcttgtgcttacaccctgttatagtatatatagggagaattg 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28947665 atgaatctctggctttaacaaacctaacttggctcttgtgcttacaccctgttatagtatatatagggagaattg 28947739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 36049590 - 36049692
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |  | |||| ||  |||||||||||||||||||||||||||||||| |||||||     
T  36049590 tataaatatgaaatgacataaaa-tgatatatttaatgaatattaa--acttttttt--attaagattacaatggtaaaattgagataaataatgataaa 36049684  T
Q  101 ctataagt 108  Q
    ||||||||    
T  36049685 ctataagt 36049692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 8407607 - 8407504
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    |||||||||||||||||||||||  ||  | |||||| ||||||||  |||||| ||||| ||||||| ||  ||||||||||||| |||  ||||||||    
T  8407607 tataaatatgaaatgacataaaaaagagatgtttaattaatattta--attttt-ttcaagtaagattccaggggtaaaattgagagaaaaaatgataag 8407511  T
Q  101 ctataag 107  Q
    |||||||    
T  8407510 ctataag 8407504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 29861473 - 29861400
Alignment:
Q  30 tatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 107  Q
    |||||||| ||||||||  |||||| ||||||||||||||||| ||||||||||||| |||  |||||||||||||||    
T  29861473 tatttaattaatattta--attttt-ttcaattaagattacaagggtaaaattgagagaaa-aatgataagctataag 29861400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 35764709 - 35764655
Alignment:
Q  51 ttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctata 105  Q
    |||| |||||||| || ||||| ||||||||||| |||||| |||||||||||||    
T  35764709 tttttttcaattatgaatacaagggtaaaattgaaataaataatgataagctata 35764655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 34812721 - 34813092
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  34812721 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttgctatttttgttcaattaagattacaatggtaaaattgagataaacgatgataac 34812820  T
Q  101 ctataagtatttgaaaatgatatggtttaacagtccttttgcttctggcatatttggaggttatgatgtaaatggcgatattctatcctcatttttatat 200  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||   |||| ||||||||||||||||||||||||||||||    
T  34812821 ctataagtatttgaaaatgatatggtttaatagtccttctgcttttggcatatttggaggtt---atgtgaatggcgatattctatcctcatttttatat 34812917  T
Q  201 gtgcaatatatatcatcagatttgttttgattgaccnnnnnnnnattattaattctggcaaacatcatgtggtgcatttaaaaatgtattgatgcaaaag 300  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34812918 gtgcaatatatatcatcagatttgttttgattgaccttttttttattattaattctggcaaacatcatgtggtgcatttaaaaatgtattgatgcaaaag 34813017  T
Q  301 atgaatctctggctttaacaaacctaacttggctcttgtgcttacaccctgttatagtatatatagggagaattg 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34813018 atgaatctctggctttaacaaacctaacttggctcttgtgcttacaccctgttatagtatatatagggagaattg 34813092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 44555620 - 44555723
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    |||||||||||||||||||||||||||| |||||||||| |||   | | |||| |||||||||||||| ||  ||||||||||||||||||||||||||    
T  44555620 tataaatatgaaatgacataaaagtgatatatttaatgattat---cgaatttttttcaattaagattaaaagagtaaaattgagataaatgatgataag 44555716  T
Q  101 ctataag 107  Q
    |||||||    
T  44555717 ctataag 44555723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 44567077 - 44566985
Alignment:
Q  3 taaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataa 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||| ||||||||| || | |||||||||||| |||||||||||    
T  44567077 taaatatgaaatgacataaaaatgatgtatttaatgaatattta--attttt-ttcagttaagattataaggataaaattgagat-aatgatgataa 44566985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 31404700 - 31404605
Alignment:
Q  7 tatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataa 106  Q
    |||| |||||||||||| |||| ||||||| ||||||| |  ||||||  |||||||||||||||| | ||||||||||||||||||| ||||| |||||    
T  31404700 tatgcaatgacataaaaatgatatatttaaagaatattaa--attttt--tcaattaagattacaaggataaaattgagataaatgattataagttataa 31404605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 30070313 - 30070216
Alignment:
Q  8 atgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 107  Q
    ||||||| |||||||| |||| |||||||| ||||||||  ||| || ||||||||||||| ||  | |||||||||||| ||| ||||||||| |||||    
T  30070313 atgaaatcacataaaaatgatatatttaattaatattta--attgtttttcaattaagatttcatggataaaattgagatcaataatgataagccataag 30070216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30802448 - 30802412
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaat 37  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  30802448 tataaatatgaaatgacataaaactgatatatttaat 30802412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 37392968 - 37393008
Alignment:
Q  75 gtaaaattgagataaatgatgataagctataagtatttgaa 115  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  37392968 gtaaaattgagataaataatgataagctatatgtacttgaa 37393008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2942089 - 2941985
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||  |||||| ||||||||||||||||| ||||||||||||||||| |||||||||    
T  2942089 tataaatataaaatgacataaaagtgatatatttaatgaatattta--attttttttcaattaagattacaagggtaaaattgagataaaggatgataag 2941992  T
Q  101 ctataag 107  Q
    || ||||    
T  2941991 ctctaag 2941985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 6588497 - 6588396
Alignment:
Q  5 aatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctat 104  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |  |||| |  ||||||||||||||  ||||||||||||||||| ||||||| ||||    
T  6588497 aatatgaaatgacattaaagtgatatatttaatgaatatttatttatttttt--aattaagattacaagagtaaaattgagataaattatgataaactat 6588400  T
Q  105 aagt 108  Q
    ||||    
T  6588399 aagt 6588396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31806639 - 31806722
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagat 87  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||| | ||||||| |||||||||| |||||||||||||    
T  31806639 tataaatatgaaatgacataaaagtgatatatttaatgaatattta--atttgttttcaattgagattacaat-gtaaaattgagat 31806722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 6462294 - 6462398
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    |||||||||||||||||| | || || | |||||||| |||||||| | |||||  ||||| |||||| ||  |||||||||||||||||| ||||||||    
T  6462294 tataaatatgaaatgacagacaaatgctatatttaattaatatttagttttttt--tcaatcaagattgcaggggtaaaattgagataaataatgataag 6462391  T
Q  101 ctataag 107  Q
    |||||||    
T  6462392 ctataag 6462398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 5657064 - 5657122
Alignment:
Q  41 tatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataa 99  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  5657064 tatttacattttttgttcaattaagataacaatggtaaaattgagataaaaaatgataa 5657122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 1621463 - 1621567
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatt--taatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgata 98  Q
    |||||||||||||||||||||||   ||||||   |||| ||||||||    |||| ||||||||||||| ||| |||||||||||||||||   |||||    
T  1621463 tataaatatgaaatgacataaaaaaaatgtatacataattaatattta----tttttttcaattaagattgcaagggtaaaattgagataaaaactgata 1621558  T
Q  99 agctataag 107  Q
    |||||||||    
T  1621559 agctataag 1621567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 7153701 - 7153803
Alignment:
Q  1 tataaatatgaaatgacataaaagtg-atgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataa 99  Q
    |||||||||||||||||||||||    |||| |||||| |||||||| |||||||   ||||||| ||||||  | | |||||||||||||| |||| ||    
T  7153701 tataaatatgaaatgacataaaaaaatatgtttttaattaatatttagtattttt---caattaatattacagggatgaaattgagataaataatgagaa 7153797  T
Q  100 gctata 105  Q
    ||||||    
T  7153798 gctata 7153803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 31677255 - 31677204
Alignment:
Q  56 ttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 107  Q
    |||||||||||||| |  |||||||||||||||||  |||||||||||||||    
T  31677255 ttcaattaagattagaggggtaaaattgagataaacaatgataagctataag 31677204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 166759 - 166651
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatattta----ctatttttgttcaattaagattacaatggtaaaattgagataaatgatga 96  Q
    |||||||||||||||||||| || |||| |||||||||||| ||||     ||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  166759 tataaatatgaaatgacatagaaatgatatatttaatgaatgtttaatttttattttttttcaattaagattacaagggtaaaatagagataaatgatga 166660  T
Q  97 taagctata 105  Q
    |||||||||    
T  166659 taagctata 166651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 32326060 - 32326164
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    ||||| ||||||||||||||||| |||| |||||||| ||||||||  |||||| ||||||||||||| ||  ||||||||||| |||||| ||||||||    
T  32326060 tataattatgaaatgacataaaaatgatatatttaattaatattta--attttttttcaattaagattgcaggggtaaaattgatataaataatgataag 32326157  T
Q  101 ctataag 107  Q
    |||||||    
T  32326158 ctataag 32326164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 33282361 - 33282460
Alignment:
Q  4 aaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagcta 103  Q
    ||||||||||||||||||||||||| |||||||| ||| |||    ||||| || |||||||||||||| | ||||||  ||||||||||||||||| ||    
T  33282361 aaatatgaaatgacataaaagtgatatatttaattaattttt----tttttttttaattaagattacaaagctaaaatcaagataaatgatgataagata 33282456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 30985 - 30885
Alignment:
Q  4 aaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattac-aatggtaaaattgagataaatgatgataagct 102  Q
    |||||||||||||||||||| |||| |||||||  ||||||||  |||||| |||||||||  |||| ||| ||||||||||||||||| ||||||| ||    
T  30985 aaatatgaaatgacataaaaatgatatatttaaataatattta--attttt-ttcaattaaagttactaatagtaaaattgagataaataatgataaact 30889  T
Q  103 ataa 106  Q
    ||||    
T  30888 ataa 30885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25290175 - 25290217
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatat 43  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  25290175 tataaatatgaaatgacataaaagtgatatattttatgaatat 25290217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 32582564 - 32582513
Alignment:
Q  56 ttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 107  Q
    ||||||||||||| ||| |||||||||||||||||   ||||||||||||||    
T  32582564 ttcaattaagattgcaagggtaaaattgagataaaaagtgataagctataag 32582513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 13799981 - 13800038
Alignment:
Q  49 atttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataa 106  Q
    |||||| ||||||||||||| ||  |||||||||||||||||   |||||||||||||    
T  13799981 attttttttcaattaagattgcaggggtaaaattgagataaaaagtgataagctataa 13800038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 37084011 - 37083906
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagat-aaatgatgataa 99  Q
    ||||| ||||||||||||||||   ||| |||||||| ||| ||||  ||| || ||||||||||  ||||| |||||||||| ||| |||  |||||||    
T  37084011 tataagtatgaaatgacataaataagatatatttaattaatgttta--attatttttcaattaaggctacaagggtaaaattgtgataaaaatatgataa 37083914  T
Q  100 gctataag 107  Q
    ||||||||    
T  37083913 gctataag 37083906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 23908869 - 23908973
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||||  |||||| | |||||||||||| |   ||||||||||||||||| ||||||||    
T  23908869 tataaatatgaaatgacataaaaatgatatatctaatgaatattta--atttttttccaattaagattataggcgtaaaattgagataaataatgataag 23908966  T
Q  101 ctataag 107  Q
    || ||||    
T  23908967 ctttaag 23908973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 5799165 - 5799251
Alignment:
Q  15 gacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctat 104  Q
    ||||||||  ||||||||||||||||||||||   ||||| | | ||||| |||||||||||||||||||||||||| || |||| ||||    
T  5799165 gacataaacttgatgtatttaatgaatattta---tttttttacgattaatattacaatggtaaaattgagataaattattataaactat 5799251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 31795398 - 31795495
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    |||||||||||||  ||||  ||||||| ||||||||||||||||  | ||||||   ||||||||||| |  |||||| ||||||||||| ||||||||    
T  31795398 tataaatatgaaacaacatggaagtgatatatttaatgaatatttcatttttttg---aattaagattataggggtaaacttgagataaataatgataag 31795494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 33644649 - 33644722
Alignment:
Q  25 tgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataa 99  Q
    |||| |||| |||||||||||| |||  || ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  33644649 tgatatattgaatgaatatttattatcatt-ttcaattaagaatacaagggtaaaattgaaataaatgatgataa 33644722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 22593554 - 22593657
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    |||||||||||||||||||||||   || |||||||| ||||||   || |||| ||||||||||||||    |||||||||  ||||||  ||||||||    
T  22593554 tataaatatgaaatgacataaaaaatatatatttaattaatatt---taattttcttcaattaagattagtggggtaaaattaggataaaaaatgataag 22593650  T
Q  101 ctataag 107  Q
    |||||||    
T  22593651 ctataag 22593657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 35926612 - 35926663
Alignment:
Q  56 ttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 107  Q
    |||||||||| |||||||||||||||||||||||   ||||||||| |||||    
T  35926612 ttcaattaaggttacaatggtaaaattgagataacaaatgataagccataag 35926663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 31117645 - 31117746
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    |||||||||||||||||| |||| || | |||||||| ||||||||    |||| |||||||||||||  |  |||||||||||||||||   ||||| |    
T  31117645 tataaatatgaaatgacaaaaaaatg-tatatttaattaatattta----tttttttcaattaagattgtaggggtaaaattgagataaaaattgatagg 31117739  T
Q  101 ctataag 107  Q
    |||||||    
T  31117740 ctataag 31117746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15801309 - 15801273
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaat 37  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  15801309 tataaatatgaaatgacataaaactgatatatttaat 15801273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 2404654 - 2404756
Alignment:
Q  2 ataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagc 101  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||  | ||||  |||||||||||||||| | |||||||||| || |||||||||| |    
T  2404654 ataaatatgaaatgatataaaagtgatatatttaatgaatattta--actttt-ctcaattaagattacaaggataaaattgaggtacatgatgataaac 2404750  T
Q  102 tataag 107  Q
    ||||||    
T  2404751 tataag 2404756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 24314210 - 24314311
Alignment:
Q  3 taaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaa-ttaagattacaatg-gtaaaattgagataaatgatgataag 100  Q
    ||||||||||||| |||||||||||| |||||||||||||||||  |||||  ||||| |||||||||||| | |||||||||||||||| |||||||||    
T  24314210 taaatatgaaatggcataaaagtgatatatttaatgaatattta--atttt--ttcaatttaagattacaaagagtaaaattgagataaacgatgataag 24314305  T
Q  101 ctataa 106  Q
     |||||    
T  24314306 ttataa 24314311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 87199 - 87286
Alignment:
Q  3 taaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaat 91  Q
    ||||||||||||||||||||| ||||  ||||||  |||||||| | ||||| |||||||||||||| |  ||||||||||||||||||    
T  87199 taaatatgaaatgacataaaaatgattcatttaaataatatttaatcttttt-ttcaattaagattagaggggtaaaattgagataaat 87286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 38808817 - 38808903
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaa 90  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||||  ||||||||||||||||| | | |||||||||||||    
T  38808817 tataaatatgaaatgacataaaagtgatatatttaatgaatattta-aatttt--ttcaattaagattacaaggatgaaattgagataaa 38808903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 27679251 - 27679146
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatt-tttgttcaattaagattacaatggtaaaattgagataaatgatgataa 99  Q
    |||||||||||||||||||||||   ||  ||||||| |||||||| |||| ||| ||| ||||||||||||  |||||||||||||||||| |||||||    
T  27679251 tataaatatgaaatgacataaaaaaaat--atttaattaatatttattattattttttcgattaagattacatgggtaaaattgagataaataatgataa 27679154  T
Q  100 gctataag 107  Q
    ||||||||    
T  27679153 gctataag 27679146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 42139545 - 42139444
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    |||||||||||||||| ||||||||| |  ||||||| ||||||||  ||||||  ||||||||||||| |  |||||||||||||||||| ||||||||    
T  42139545 tataaatatgaaatgatataaaagtgctacatttaattaatattta--attttt--tcaattaagattagaggggtaaaattgagataaataatgataag 42139450  T
Q  101 ctataa 106  Q
    ||||||    
T  42139449 ctataa 42139444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 15804512 - 15804464
Alignment:
Q  59 aattaagattacaatggtaaaattgagataaatgatgataagctataag 107  Q
    ||||||||||| || |||||||||||||||||| |||||||||||||||    
T  15804512 aattaagattagaagggtaaaattgagataaataatgataagctataag 15804464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 33625707 - 33625608
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    |||||||||||||||| ||  ||||||| ||||||||| ||||| || |   ||   ||||||||||||||| | |||||||||||||||| ||||||||    
T  33625707 tataaatatgaaatgatattgaagtgatatatttaatgcatattaacaaaaatt---caattaagattacaaggttaaaattgagataaattatgataag 33625611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 14477640 - 14477741
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    ||||||||||||||||||||||| | || |||||| | ||| ||||   ||||| ||||||||||||| ||  ||| ||||||| |||||| ||||||||    
T  14477640 tataaatatgaaatgacataaaatt-atatatttagttaatgttta---ttttttttcaattaagattgcagaggttaaattgaaataaataatgataag 14477735  T
Q  101 ctataa 106  Q
    ||||||    
T  14477736 ctataa 14477741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8752629 - 8752584
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatattta 46  Q
    ||||||||||||||||||||||| |||| | |||||| ||||||||    
T  8752629 tataaatatgaaatgacataaaaatgatatgtttaattaatattta 8752584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 44984245 - 44984351
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgt--atttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgata 98  Q
    |||||||||||||||||||||||   ||||  ||||||| |||||||| |  |||| ||| ||||||||||| | |||||||||||||||||   |||||    
T  44984245 tataaatatgaaatgacataaaaaa-atgtgcatttaattaatatttatttatttt-ttcgattaagattactagggtaaaattgagataaaaagtgata 44984342  T
Q  99 agctataag 107  Q
    | |||||||    
T  44984343 acctataag 44984351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 44810192 - 44810135
Alignment:
Q  31 atttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaa 90  Q
    ||||||| |||||||  ||||||  |||||||||| |||||| |||||||||||||||||    
T  44810192 atttaatcaatattt--tattttctttcaattaaggttacaagggtaaaattgagataaa 44810135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2046073 - 2046175
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataag 100  Q
    |||||||||||||| ||||| || |||| |||||||||||||| || |||||||  |||||||||||| ||| |||||||||||||| ||| |||||||     
T  2046073 tataaatatgaaataacatagaattgatatatttaatgaatatata-tattttt--tcaattaagatttcaagggtaaaattgagatgaataatgataaa 2046169  T
Q  101 ctataa 106  Q
    ||||||    
T  2046170 ctataa 2046175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 9749907 - 9749959
Alignment:
Q  56 ttcaattaagattacaatggtaaaattgagataaatgatgataagctataagt 108  Q
    ||||||||||||| ||  |||||||||||||||||| ||||||||||||||||    
T  9749907 ttcaattaagattgcaggggtaaaattgagataaataatgataagctataagt 9749959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 9750302 - 9750243
Alignment:
Q  48 tatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 107  Q
    ||||||| ||||||||||||  ||| |||||||||||||||||  |||||||||||||||    
T  9750302 tattttttttcaattaagatagcaaaggtaaaattgagataaaatatgataagctataag 9750243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 32448150 - 32448199
Alignment:
Q  59 aattaagattacaatggtaaaattgagataaatgatgataagctataagt 108  Q
    ||||||||| |||| |||||||||||||||||||||| |||| |||||||    
T  32448150 aattaagataacaagggtaaaattgagataaatgatggtaagatataagt 32448199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 4405557 - 4405611
Alignment:
Q  51 ttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctata 105  Q
    |||| |||||||||||| |||| ||||||||||||| |||  |||||||||||||    
T  4405557 tttttttcaattaagataacaaaggtaaaattgagagaaaaaatgataagctata 4405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25142294 - 25142330
Alignment:
Q  1 tataaatatgaaatgacataaaagtgatgtatttaat 37  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  25142294 tataaatatgaaatgatataaaagtgatatatttaat 25142330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 49861 - 49917
Alignment:
Q  51 ttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 107  Q
    |||| ||||||||||||| ||| |||||||||||||||||   ||||||||||||||    
T  49861 tttttttcaattaagattgcaagggtaaaattgagataaaaagtgataagctataag 49917  T

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