View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_low_13 (Length: 362)
Name: NF14916_low_13
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 358
Target Start/End: Original strand, 29490102 - 29490434
Alignment:
| Q |
30 |
gtcttctcaccgcacacaaccttgatccggtgactgtctagtaaatgtccttgtccaactagaacatttcagaatattctatatgcttcaaatattaggt |
129 |
Q |
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| T |
29490102 |
gtcttctcaccgcacacaaccttgatccggtgattgtctagtaaatgtccctgtccaactagaacatttcagaatattctatatccttcgaatattaggt |
29490201 |
T |
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| Q |
130 |
nnnnnnnnnccactaactttatatataacatgctttatattgttcaaaaagtgacaacctataattcactta------ggatttagtgattctctacaat |
223 |
Q |
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| T |
29490202 |
aaaaaaaa-ccactaactttataaataacatgctctatattgttcacaa-gtaacaacctataattcactttcacttgggatttagtgattctctacaat |
29490299 |
T |
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| Q |
224 |
catggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgcattagctgaaaagggagttcaatatgagtacaaa |
323 |
Q |
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| T |
29490300 |
catggcaaacgaggtagttttgttggatacatgggttagcatgtttggtatgagggttagaattgcattagctgaaaagggagttcaatatgagtacaaa |
29490399 |
T |
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| Q |
324 |
gaagaaaatcttagagataaaagtcctatgcttct |
358 |
Q |
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| T |
29490400 |
gaagaaaatcttagagataaaagtcctatacttct |
29490434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 218 - 350
Target Start/End: Original strand, 29488197 - 29488329
Alignment:
| Q |
218 |
tacaatcatggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgcattagctgaaaagggagttcaatatgag |
317 |
Q |
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| T |
29488197 |
tacaatcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgag |
29488296 |
T |
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| Q |
318 |
tacaaagaagaaaatcttagagataaaagtcct |
350 |
Q |
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| T |
29488297 |
tacaaagaagaagatctcagaaataagagtcct |
29488329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 350
Target Start/End: Original strand, 29502368 - 29502527
Alignment:
| Q |
191 |
taattcacttaggatttagtgattctctacaatcatggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgca |
290 |
Q |
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| T |
29502368 |
taattaacataggatttagtgatcttcaagagtcatggcaaacgaagtggttctgttggatacatggtttagcatgtttgggatgagagttaagattgca |
29502467 |
T |
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| Q |
291 |
ttagctgaaaagggagttcaatatgagtacaaagaagaaaatcttagagataaaagtcct |
350 |
Q |
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| T |
29502468 |
ttagctgaaaaaagtgttaaatacgagtgtaaagaagaaaatctcagaaataagagtcct |
29502527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 218 - 350
Target Start/End: Complemental strand, 30256874 - 30256742
Alignment:
| Q |
218 |
tacaatcatggcaactgaggtggttttgttggatacatgggttagcatgtttggtatgagggttaggattgcattagctgaaaagggagttcaatatgag |
317 |
Q |
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| T |
30256874 |
tacaatcatggcaaacgaggtaattctgtcagatacatgggctagcgtgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgag |
30256775 |
T |
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| Q |
318 |
tacaaagaagaaaatcttagagataaaagtcct |
350 |
Q |
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| T |
30256774 |
tacaaagaagaagatcttagaaataagagtcct |
30256742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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