View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_low_15 (Length: 341)
Name: NF14916_low_15
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 3 - 322
Target Start/End: Original strand, 40944027 - 40944346
Alignment:
| Q |
3 |
atggttctgatgcttattctgcttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaaca |
102 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
40944027 |
atggttctgatgcttattctgcttgtttttcagatttttgaatgctggaatatttggaaaaggaagtgagtcaagccacacacttccacacacagcaaca |
40944126 |
T |
|
| Q |
103 |
agagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40944127 |
agagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacg |
40944226 |
T |
|
| Q |
203 |
tcactccatgtttaccacttcgcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaactggaagacctaattccaa |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40944227 |
tcactccatgtttaccacttcgcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaactggaagaccaaattccaa |
40944326 |
T |
|
| Q |
303 |
agctcatggaccctctggag |
322 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
40944327 |
agctcatggaccatctggag |
40944346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 24 - 322
Target Start/End: Original strand, 40958013 - 40958311
Alignment:
| Q |
24 |
cttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgaga |
123 |
Q |
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|||||||| ||| ||||||||||| |||||||| ||||| ||||| ||||||| |||||||| |||||||| ||||||||||| ||||||||||||||| |
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| T |
40958013 |
cttgttttccaggtttttgaatgcaggaatattcggaaatggaacagagtcaaatcacacactaccacacacggcaacaagagcagccatgctagtgaga |
40958112 |
T |
|
| Q |
124 |
atcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttc |
223 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
40958113 |
atcaacacactcctccaaggctattcaggaattagatttgaaatcttggaagccatcactaagctccttaacaacaacgtcactccatgtttaccacttc |
40958212 |
T |
|
| Q |
224 |
gcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaactggaagacctaattccaaagctcatggaccctctggag |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||| |
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| T |
40958213 |
gcggtacaatcacagcttcaggagatttggtccctctatcttacattgctggtttactaacaggaagaccaaattcaaaagctcatggaccatctggag |
40958311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 37 - 322
Target Start/End: Complemental strand, 28185358 - 28185073
Alignment:
| Q |
37 |
tttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacacactcc |
136 |
Q |
| |
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||||||||||| ||||||||||| || || || || |||| ||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| || | |
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| T |
28185358 |
tttttgaatgccggaatatttggcaatggtacagaatcaaattgtacactaccacatacagcaacaagagctgcaatgcttgtgaggatcaacactcttc |
28185259 |
T |
|
| Q |
137 |
tccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttcgcggtacaatcac |
236 |
Q |
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| ||||| ||||| || || |||||||||||||||||||| ||||| || ||| | |||||||| | || ||||||||||||||||||||||||||||| |
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| T |
28185258 |
ttcaagggtattctggtattagatttgaaatcttggaagctatcacaaagctcttgaacaacaatattaccccatgtttaccacttcgcggtacaatcac |
28185159 |
T |
|
| Q |
237 |
agcttcaggagatttggtccctctatcttacattgctggtttactaactggaagacctaattccaaagctcatggaccctctggag |
322 |
Q |
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|||||| || ||| | || || || ||||||||||| |||||| |||| || ||||| || || ||||| |||||| ||||||| |
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| T |
28185158 |
agcttccggtgatcttgttccactctcttacattgccggtttattaacgggcagacccaactctaaagccgttggaccgtctggag |
28185073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 42610688 - 42610605
Alignment:
| Q |
93 |
cacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagc |
176 |
Q |
| |
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|||||| |||||||| | |||| | || |||||||||||| | || ||||| |||||||||||||||||||||||| ||||||| |
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| T |
42610688 |
cacagccacaagagcaggcatgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagc |
42610605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 40548770 - 40548956
Alignment:
| Q |
32 |
acagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacac |
131 |
Q |
| |
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|||| ||||||||||||||||| ||||| || ||||| || | |||| ||| | ||||| | |||||||||||||| ||| |||| ||||||||||| |
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| T |
40548770 |
acaggtttttgaatgctggaatttttggtaatggaacagaacaatgccatacattgccacaaaatgcaacaagagctgcaatgttagtaagaatcaacac |
40548869 |
T |
|
| Q |
132 |
actcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttacc |
218 |
Q |
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|||||| ||||| || ||||||||||||| |||||| | |||||||| || || || || ||| ||||| | || ||||||||||| |
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| T |
40548870 |
actccttcaaggctactcaggaatcagatatgaaatgctagaagccattacaaaacttctcaaccacaacattacaccatgtttacc |
40548956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 43215871 - 43215965
Alignment:
| Q |
97 |
gcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctcct |
191 |
Q |
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||||||||||| || ||||| ||||| | || || || || ||||| |||||||| || |||||||||||||| ||||| |||||||| ||||| |
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| T |
43215871 |
gcaacaagagcagctatgcttgtgagggttaatacccttctacaaggctattcaggcattagatttgaaatcttagaagctatcaccaagctcct |
43215965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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