View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_low_19 (Length: 286)
Name: NF14916_low_19
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 37387003 - 37386748
Alignment:
| Q |
18 |
gagtggtcctctaaacgttctgtttgtgatactgatagtaaatttatctactcatctagcctttgcactaaattttcttcaaaagcctgcatcactgaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37387003 |
gagtggtcctctaaacgttctgtttgtgatactgatagtaaatttatctactcatctagcctttgcactaaattttcttcaaaagcctgcatcactgaag |
37386904 |
T |
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| Q |
118 |
cttaaaattcaccaagcagacacttgccacagaaacaaccccattcatcctcataacatatacatgcaaacccaaataaagggccactgtgcccattcta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37386903 |
cttaaaattcaccaagcagacacttgccacagaaacaaccccattcatcctcata------acatgcaaacccaaataaagggccactgtgcccattcta |
37386810 |
T |
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| Q |
218 |
ctttaaaagcacattactctcaccgtataggctagctaggctctcaaaaacataatgatgat |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37386809 |
ctttaaaagcacattactctcaccgtataggctagctaggctctcaaaaacataattatgat |
37386748 |
T |
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