View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_low_21 (Length: 268)
Name: NF14916_low_21
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_21 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-150; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 14622638 - 14622371
Alignment:
| Q |
1 |
cgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14622638 |
cgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatc |
14622539 |
T |
|
| Q |
101 |
tcttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14622538 |
tcttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagag |
14622439 |
T |
|
| Q |
201 |
gttctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttcc |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14622438 |
gttctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttcc |
14622371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 14588980 - 14588713
Alignment:
| Q |
1 |
cgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14588980 |
cgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccattcaggattcttttcatcttcttcgtcatc |
14588881 |
T |
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| Q |
101 |
tcttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14588880 |
tcttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagag |
14588781 |
T |
|
| Q |
201 |
gttctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttcc |
268 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14588780 |
gttctgaaaagaaaaaggtcaacacttgcgtatagtttgtcggcatcagaacgactaaattttcttcc |
14588713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 12846535 - 12846329
Alignment:
| Q |
1 |
cgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatc |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| ||||||||| |||| || ||||||| ||| ||||||| || || || || || || || |
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| T |
12846535 |
cgctcccaaatccaatgtaaacaacggaagatgattctcttgaatccagccatttttttattttcaaccaatcaggatggttctcttcctcctcatcgtc |
12846436 |
T |
|
| Q |
101 |
tcttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagag |
200 |
Q |
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|||||||||||||| |||||||||||| || || |||| |||||| |||||||||| ||||| |||||||| |||||||||| |||||| ||||| || |
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| T |
12846435 |
tcttatctgcatagatggtggaagcaacccaacaagaacgacaggagccttgtattgttcagagatataatccaaccattcactttcaagctctcttgat |
12846336 |
T |
|
| Q |
201 |
gttctga |
207 |
Q |
| |
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||||||| |
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| T |
12846335 |
gttctga |
12846329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 29954557 - 29954317
Alignment:
| Q |
1 |
cgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| || |||||||| || |
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| T |
29954557 |
cgctcccaaatccaatgtaaacaacagaagatgattcttttgaatccaaccatgccttgattttcacccaactagggttgctttcttcctcttcgtcgtc |
29954458 |
T |
|
| Q |
101 |
tcttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagag |
200 |
Q |
| |
|
|||||||||||| | ||||||||||| ||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29954457 |
tcttatctgcatggatggtggaagcattccaactggaaccacaggaactttgtattggtaagaaatataatctaaccattcaccttcaagttctctagag |
29954358 |
T |
|
| Q |
201 |
gttctgaaaagaaaaaggtcaacacttgcgtatagtttgtc |
241 |
Q |
| |
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||||| | ||||||||||||| ||||| ||||| |||||| |
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| T |
29954357 |
gttcttataagaaaaaggtcacaacttgagtatactttgtc |
29954317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 51369896 - 51370123
Alignment:
| Q |
1 |
cgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatc |
100 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | ||||| ||||| || |||||||| | || ||| || |
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| T |
51369896 |
cgcttccaaatccaatgtaaacaacagaagatgattcttttgagtccaaccatgccttgatgtggacccaatcagggttgttttcatcatgttggtcgtc |
51369995 |
T |
|
| Q |
101 |
tcttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagag |
200 |
Q |
| |
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|||||| |||| | ||||||||| | ||| || |||| |||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||| |
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| T |
51369996 |
tcttatatgcaaggatggtggaagaactccaacaggaagcacaggaaccttgtatcggtgagaaagataatctaaccatggaccttcaagttctctagag |
51370095 |
T |
|
| Q |
201 |
gttctgaaaagaaaaaggtcaacacttg |
228 |
Q |
| |
|
||||| | |||||| | |||| |||||| |
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| T |
51370096 |
gttctaataagaaacatgtcagcacttg |
51370123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 1361905 - 1361691
Alignment:
| Q |
3 |
ctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatctc |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||| |||||||| || || || ||||| || |||| |
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| T |
1361905 |
ctcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcgtctc |
1361806 |
T |
|
| Q |
103 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
202 |
Q |
| |
|
|||||||||||| |||||||||||| || || ||||| |||||||||||||| || ||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
1361805 |
ttatctgcatagatggtggaagcaacccaacaggaacgacaggaaccttgtactgttcagagatataatccaaccattcaccttcaagttctcttgaggt |
1361706 |
T |
|
| Q |
203 |
tctgaaaagaaaaag |
217 |
Q |
| |
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||||| ||||||||| |
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| T |
1361705 |
tctgagaagaaaaag |
1361691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 20492692 - 20492472
Alignment:
| Q |
1 |
cgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatc |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||||| || | || |
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|
| T |
20492692 |
cgctcccgaatccaatgtaaacaaccgaagatgattcttttgaatccaaccaagccttgattttcacccaatcagggtcgttttcttcttcctcattgtc |
20492593 |
T |
|
| Q |
101 |
tcttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagag |
200 |
Q |
| |
|
|||||||||||| | ||||||||| | ||| || ||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
20492592 |
tcttatctgcatggatggtggaagtattccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtg |
20492493 |
T |
|
| Q |
201 |
gttctgaaaagaaaaaggtca |
221 |
Q |
| |
|
| ||||| ||||| ||||||| |
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| T |
20492492 |
gctctgataagaataaggtca |
20492472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 1355019 - 1354805
Alignment:
| Q |
3 |
ctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatctc |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||| |||||||| || || || ||||| ||||||| |
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| T |
1355019 |
ctcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcatctc |
1354920 |
T |
|
| Q |
103 |
ttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggt |
202 |
Q |
| |
|
|||||||||||| ||||||| ||| || || ||||| |||||||| ||||| || ||||| |||||||| ||||||||||||||||| ||||| ||||| |
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|
| T |
1354919 |
ttatctgcatagaaggtggaatcaacccaacaggaacaacaggaacattgtactgttcagagatataatccaaccattcaccttcaagctctctcgaggt |
1354820 |
T |
|
| Q |
203 |
tctgaaaagaaaaag |
217 |
Q |
| |
|
||||| ||| ||||| |
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|
| T |
1354819 |
tctgagaagtaaaag |
1354805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11531870 - 11531651
Alignment:
| Q |
1 |
cgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| ||| | || ||||| || | |||||| || |
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|
| T |
11531870 |
cgctcccaaatccaatgtaaacaacagaagacgattcttttgaatccaaccatgccttgattttcatccaatcaaggttgttttcttcct-ttcgtcttc |
11531772 |
T |
|
| Q |
101 |
tcttatctgcataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagag |
200 |
Q |
| |
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|||||||||||| | ||||||||||||||| || ||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| || || |
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|
| T |
11531771 |
tcttatctgcatggatggtggaagcaatccaactggaaccacacgaaccttatattggctagaaatataatctaaccattcaccttcaagttctttacag |
11531672 |
T |
|
| Q |
201 |
gttctgaaaagaaaaaggtca |
221 |
Q |
| |
|
|||||| |||||||| |||| |
|
|
| T |
11531671 |
cttctgataagaaaaatgtca |
11531651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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